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Detailed information on CNT30520010


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SRN0|NHL1_ARATH, E-value = 9e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369597Setaria italicaOryza glumipatula40.962.7587.74155forward

Expression of CNT30520010

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MHPQQRRRWCSWRWCLPSLLMADQWSRPRSALLSPLLR*

>peptide 2 (93 aa)
DRDGLVAVGDEDVEAAVEDADVVVGVAGGQRHLRRRREGRVAHGDGAAELQVLQVEGRLGGAERERQEARRHAPAAAPQVVLVAVVLALLAHG*

Sequence

>CNT30520010
GGGACCGTGACGGGCTCGTCGCGGTAGGTGACGAAGACGTCGAGGCGGCGGTAGAGGACGCCGACGTGGTCGTTGGGGTTGCGGGAGGCCAGCGTCACCT
GCGCCGACGCCGAGAGGGACGGGTCGCCCACGGTGATGGGGCGGCGGAGCTGCAGGTCCTGCAGGTAGAAGGACGGCTTGGAGGGGCGGAGCGCGAGCGC
CAGGAGGCACGACGCCATGCACCCGCAGCAGCGCCGCAGGTGGTGCTCGTGGCGGTGGTGCTTGCCCTCCTTGCTCATGGCTGATCAGTGGTCACGACCG
CGCTCTGCTCTGCTCTCTCCCCTGCTCCGGTGAGCTGTGGGTGTGCCTGGAGCTCTGAGCTGAACCTGCTGTGTGTGAG