Detailed information on CNT30231759


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369597Ananas comosusOryza glumipatula11.3120.6590.251forward
CNT30117133Ananas comosusOryza nivara19.7328.2588.7689forward

Expression of CNT30231759

Peptides detected in this lncRNA

>peptide 1 (47 aa)
GVDVDAVVVDADVVVGVAGGDGDLDDGGEDVVGGRTWVWWGGGRARR*

>peptide 2 (82 aa)
MPMWSLGLREEMVTWMTEERMLSGVELGFGGAEGEPDDEDDEEDDDHQPQQAREGAPVHLLPLALAVVAAVLPHPCNCSIIS*

>peptide 3 (46 aa)
MRMMRRTMITSPSRHAKARRYIFCRSHSPWLPQSFPILVTAQLLVD*

Sequence

>CNT30231759
GGCGTAGACGTCGACGCGGTCGTAGTAGATGCCGATGTGGTCGTTGGGGTTGCGGGAGGAGATGGTGACCTGGATGACGGAGGAGAGGATGTTGTCGGGG
GTAGAACTTGGGTTTGGTGGGGCGGAGGGCGAGCCAGACGATGAGGATGATGAGGAGGACGATGATCACCAGCCCCAGCAGGCACGCGAAGGCGCGCCGG
TACATCTTCTGCCGCTCGCACTCGCCGTGGTTGCCGCAGTCCTTCCCCATCCTTGTAACTGCTCAATTATTAGTTGATTAACAGCTAATCGATCGATCAC
TACCTGTTCAGTGAATCGAGCACTAGTAGATCGATTAATTTTAGCTAGCGCACAGGGTTGATTTTGAGTGTTTTTGTGTTGGTGGTGACTGGGAATTGAG
TGCTAGGATTAGGTAGGAGATAAGAGGGGGAAGAGGCGAAGGGGGAGGGGG