Detailed information on CNT30132292


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SRN0|NHL1_ARATH, E-value = 7e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691407Lolium perenneOryza sativa35.1723.7390.91121forward
CNT30519659Lolium perenneSetaria italica5022.0586.63172forward
CNT30552828Lolium perenneOryza glaberrima51.4532.7290.96177forward
CNT30461908Lolium perenneSaccharum spontaneum5013.983.14172forward
CNT30595730Lolium perenneOryza meridionalis50.2922.9489.6173forward
CNT30369597Lolium perenneOryza glumipatula39.2454.6691.11135forward
CNT30109084Lolium perenneOryza longistaminata42.1513.2291.03145forward
CNT30116075Lolium perenneOryza nivara50.2917.0485.55173forward

Expression of CNT30132292

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MPTWSLGLREASVTCAVAESEGSPRWTERSCRSCRKKEGLVGRSAR*

>peptide 2 (63 aa)
RPSTLTCSATYPAAMSCFMASATYAATGTDSPDSTGDQMVTSRCPWYMGGREIGTVTKTSRRR*

>peptide 3 (85 aa)
AAVDLDLQRDVPGGDVLLHGVGDVRGHGNGLPGQHRGPDGDIPMSLVHGRQGDRHRDEDVEAPVEDADVVIGVAGGERDLRSSGE*

Sequence

>CNT30132292
CGCGGCCGTCGACCTTGACCTGCAGCGCGACGTACCCGGCGGCGATGTCCTGCTTCATGGCGTCGGCGACGTACGCGGCCACGGGAACGGACTCCCCGGA
CAGCACCGGGGACCAGATGGTGACATCCCGATGTCCCTGGTACATGGGCGGCAGGGAGATCGGCACCGTGACGAAGACGTCGAGGCGCCGGTAGAAGATG
CCGACGTGGTCATTGGGGTTGCGGGAGGCGAGCGTGACCTGCGCAGTAGCGGAGAGTGAGGGGTCCCCGAGATGGACGGAGCGGAGCTGCAGGTCCTGCA
GGAAGAAGGAAGGCTTGGTGGGGCGGAGCGCGAGGTAGACGACG