Detailed information on CNT30364564


BLAST search results

BLAST vs Swiss-Prot:
sp|P24067|BIP2_MAIZE, E-value = 2e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512873Sorghum bicolorJuglans regia34.0421.5680.62160forward
CNT30727335Sorghum bicolorCorchorus capsularis47.8734.6779.11225forward
CNT30243992Sorghum bicolorAvena sativa33.1924.0792.31156forward
CNT3082625Sorghum bicolorBrassica juncea14.4721.5288.2468forward
CNT30613247Sorghum bicolorArabis alpina19.7930.5983.8793forward
CNT3041009Sorghum bicolorChlamydomonas reinhardtii11.9126.0587.556forward
CNT30689574Sorghum bicolorTriticum urartu49.5777.4192.27233forward
CNT30369492Sorghum bicolorOryza glumipatula32.1328.4986.75151forward
CNT30154231Sorghum bicolorPrunus persica18.325.688.3786forward
CNT30704517Sorghum bicolorPrunus avium24.6819.6384.48116forward
CNT30150244Sorghum bicolorBrachypodium distachyon54.6848.4986.77257forward

Expression of CNT30364564

Peptides detected in this lncRNA

>peptide 1 (91 aa)
RKTKSSTLSTSNGRAARRLVLSADETHHPSSTLNTITKFGMAPGTPHHHHQSTARRGRRRRHPPSHHHRRGRRRTAGTRPRRWGCRRPPPP*

>peptide 2 (73 aa)
MGLQTASTSLSFSTYSSFSADCLSASLSLSPTVFFMLYTYVSSWFRASIRSFTFLSSSANSSASFTMRSISSWL

Sequence

>CNT30364564
AAGAAAAACAAAGAGTTCTACGCTCAGCACGTCTAATGGCAGAGCAGCACGAAGATTAGTTTTGTCCGCAGATGAAACCCACCACCCCTCCTCCACCCTA
AACACCATTACAAAATTTGGCATGGCTCCCGGCACTCCTCATCACCACCACCAATCTACAGCTCGTCGTGGTCGTCGTCGACGCCACCCTCCGAGTCATC
ACCACCGCCGGGGGCGCCGCCGGACCGCTGGTACACGGCCGAGACGATGGGGTTGCAGACGGCCTCCACCTCCTTGAGCTTCTCCACGTACTCGTCCTTC
TCGGCCGACTGCTTGTCGGCGAGCTTGTCCTTGTCGCCCACCGTGTTCTTCATGTTGTACACGTACGTCTCCAGCTGGTTCCGGGCGTCGATCCGCTCCT
TCACCTTCTTGTCCTCCTCAGCGAACTCCTCCGCCTCCTTCACCATGCGGTCGATCTCCTCCTGGCTCAG