Detailed information on CNT3041009


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42434|BIP_SPIOL, E-value = 6e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30239820Chlamydomonas reinhardtiiAvena sativa24.6520.790.5753forward
CNT30689574Chlamydomonas reinhardtiiTriticum urartu24.6517.6188.6853forward
CNT30364564Chlamydomonas reinhardtiiSorghum bicolor26.0511.9187.556forward

Expression of CNT3041009

Peptides detected in this lncRNA

>peptide 1 (70 aa)
LQRLLDGGGDLLLVLLLDLVLHLVLHGALHVVAVGLQLVAGVDLGLDGLVLHLGDAGGAAHQHNLIDLGLL

>peptide 2 (31 aa)
SSASLTAAVIFSLSSSSILSFILSSTVLFML*

Sequence

>CNT3041009
ACTCCAGCGCCTCCTTGACGGCGGCGGTGATCTTCTCCTTGTCCTCCTCCTCGATCTTGTCCTTCATCTTGTCCTCCACGGTGCTCTTCATGTTGTAGCA
GTAGGTCTCCAGCTGGTTGCGGGCGTCGATCTTGGCCTTGACGGCCTTGTCCTGCACCTTGGGGATGCGGGTGGAGCCGCCCACCAGCACAATCTCATCG
ATCTCGGTCTTCTTC