« Back to Brachypodium distachyon search


Detailed information on CNT30150244


BLAST search results

BLAST vs Swiss-Prot:
sp|P24067|BIP2_MAIZE, E-value = 2e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512873Brachypodium distachyonJuglans regia24.1517.2581.25128forward
CNT30243992Brachypodium distachyonAvena sativa26.621.7695.74141forward
CNT3082625Brachypodium distachyonBrassica juncea12.8321.5288.2468forward
CNT30613247Brachypodium distachyonArabis alpina17.5530.5983.8793forward
CNT30689574Brachypodium distachyonTriticum urartu26.4246.5195140forward
CNT30364564Brachypodium distachyonSorghum bicolor25.6628.9497.06136forward
CNT30369492Brachypodium distachyonOryza glumipatula21.8921.8985.34116forward

Expression of CNT30150244

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MLYTYVSSWFRASMRSFTFLSSSANSSASFTIRMPLASTSKVTSI*

Sequence

>CNT30150244
TCTGGTATCTGCAGAGAATAAACCCTCCCAAATCCCAATTACCCTGAAGTAACAACCCAAAGCAAGTCATCATTATCCATAGGAGTAAAAATCTCTGTCC
AACCCCTCTAAAGTAAACCTGACACCATTACAAAAATTGGTTCCCTTCTCACCGAGGCCAGACACATCATCTACAGCTCGTCGTGCTCCTCGTCGTCGAC
GCCACCTGCGCCGTCCTCGCCGCCAGGAGCGCCGCCGGACCTCTGGTAGACGGCGGACACGATGGGGTTGCAGACGGCCTCCACCTCCTTGAGCTTCTCC
TCGTAGGCCTCCTCCACCTTCTCCTTCTCCTCGCTCTCCAGCTTGTCGGCCAGCTTGTCCTTGTCGCCGACCGTGTTCTTCATGTTGTACACGTACGTCT
CCAGCTGGTTCCGGGCGTCGATGCGCTCCTTCACCTTCTTGTCCTCCTCGGCGAACTCCTCCGCCTCCTTCACCATCCGGATGCCGTTGGCGTCCACCTC
GAAGGTGACCTCAATTTGAGGAGTGCCTCT