Detailed information on CNT30704517


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FSY7|BIP_CORAV, E-value = 5e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512873Prunus aviumJuglans regia27.2421.790.06161forward
CNT30727335Prunus aviumCorchorus capsularis21.4919.5788.19127forward
CNT30239820Prunus aviumAvena sativa18.2742.1987.96108forward
CNT3082625Prunus aviumBrassica juncea22.1741.4686.26131forward
CNT30613247Prunus aviumArabis alpina17.634.2188.46104forward
CNT30689574Prunus aviumTriticum urartu19.6338.5486.21116forward
CNT30364564Prunus aviumSorghum bicolor19.6324.6884.48116forward
CNT30154147Prunus aviumPrunus persica77.33100.6697.59457forward
CNT30726085Prunus aviumLupinus angustifolius29.151.581.98172forward

Expression of CNT30704517

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MYHHFKKRQAREKKIRLPQLPLLTPIKKNYSKQSPSPKPIITSFLSSRFHFLTVVNKS*

Sequence

>CNT30704517
AACCAAACTTATAAAAACTGTATCCTTTTATCAAAACAAAGAAATTACACGTAACTAACAAAAAGACTTGATAAATGTATCACCACTTCAAAAAAAGACA
AGCGAGGGAGAAGAAAATCCGTCTCCCTCAACTTCCCCTTCTAACCCCCATCAAGAAAAATTACAGTAAACAGTCTCCTTCCCCTAAACCTATAATAACC
TCATTTCTCTCCTCTCGCTTCCACTTTCTCACAGTGGTCAATAAAAGTTAAAAAGACTTCTTCTAAAGCTCATCATGTGAGTCCTCGTCCTCCTCTGAGG
CTGCTCCGCCACCTGGGGCACCACCTGACCTCTGGTAAACAGCTGTGATGATGGGGTTGCATACGGCTTCGACCTCCTTGAGCTTCTCATCATAGGCTTC
CTTTGTGGCGGTCTCAATCTTCTCCTTCTCGTCGGACTCGAGCTTGTCAGCAAGCTTGTCTTTGTCATTGATCTGGTTCTTCATGTTGTAGACATAGGTC
TCTAGGCTGTTGCGGGCATCGATCCTCTCCTTCACCTTCTTGTCTTCTTCGGCAAACTCTTCTGCCTCCTTAACCATGCGGTCGATTTCCT