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Detailed information on CNT30243992


BLAST search results

BLAST vs Swiss-Prot:
sp|P24067|BIP2_MAIZE, E-value = 3e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512873Avena sativaJuglans regia51.0844.6179.46331forward
CNT3082625Avena sativaBrassica juncea40.983.8679.62265forward
CNT30364564Avena sativaSorghum bicolor24.0733.1992.31156forward
CNT30569890Avena sativaVitis vinifera23.9225.5883.87155forward
CNT30150244Avena sativaBrachypodium distachyon27.0133.0296175forward

Expression of CNT30243992

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MSDPPTNHYKNWFHRQPSSTAHRAPRPRGRHQHPRHRGRHQTSGTRQTRWGCRQPPPP*

>peptide 2 (32 aa)
MRIRYNNKTKKHQKEVARVSTTPSTTDVSCSK*

Sequence

>CNT30243992
CACCTCCCTAAGTAACTTCTTTAAACACAAGCAAAATGCAACAAGGCGGACAACAGGAGGGGTATAGGTAAAGACAAACTGCATCAGCTTTTCTTCACAT
AAATTCCGATGCGAATCCGCTATAATAACAAAACGAAAAAACATCAGAAGGAAGTAGCAAGAGTTTCTACAACTCCATCAACAACAGACGTCTCTTGTAG
TAAGTGATTATCCATGTCTGACCCCCCTACTAACCATTACAAAAATTGGTTTCACCGACAACCATCATCTACAGCTCATCGTGCTCCTCGTCCTCGAGGC
CGCCATCAGCACCCTCGCCACCGGGGGCGCCACCAGACCTCTGGTACACGGCAGACACGATGGGGTTGCAGACAGCCTCCACCTCCTTGAGCTTCTCGTC
GTAGTCCTCCTTCTCGGCCGTCTGGTTCTCATCCAGCCACTCCAAGGCCTCCTTCAGGGCCTCCTCCACCTTCTCCTTCTCCTCGCTCTCAAGCTTGTCC
GCCAGCTTGTCCTTGTCGCCGACGGTGTTCTTCATGTTGTACACGTAGGTCTCGAGCTGGTTCCGGGCGTCGATGCGCTCCTTCACCTTCTTGTCCTCCT
CGGCGAACTCCTCTGCCTCCTTGACCATCCGGTCAATCTCCTCCTGGC