Detailed information on CNT3012748


BLAST search results

BLAST vs Swiss-Prot:
sp|Q940H8|FRL4B_ARATH, E-value = 3e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30451421Zea maysSaccharum spontaneum100.1350.192.35784forward
CNT30143000Zea maysLolium perenne31.4225.4184.55246forward
CNT30362762Zea maysSorghum bicolor100.1373.3490.94784forward
CNT30102775Zea maysOryza rufipogon30.0126.3786.81235forward
CNT30576925Zea maysOryza barthii30.0126.2686.81235forward
CNT30116193Zea maysOryza nivara31.821.6782.33249forward

Expression of CNT3012748

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MRLVAGPPLPPLVALDAAFFFSVLAFSSSSSCFRRPSSGNSASSLRSSTHLMTARSADCSFLFTLL

>peptide 2 (35 aa)
MLPSSSRSWLSLVLQVASEDPPVETQLLVYDPQHT*

>peptide 3 (37 aa)
PTYRCSQSLQNRAIERGFESLASSVVVMSFISDFFVS*

>peptide 4 (39 aa)
TQPTVVVSRYKTGPLSGVSSRWHHQLLSCHSSATSSFPD*

>peptide 5 (52 aa)
MMHGLGRLWRMRRGMGRYWRMRCGTGRCWRMTRGRETGSMWWELGEKTRKHC*

Sequence

>CNT3012748
ACCCAACCTACCGTTGTAGTCAGTCGCTACAAAACAGGGCCATTGAGCGGGGTTTCGAGTCGTTGGCATCATCAGTTGTTGTCATGTCATTCATCAGCGA
CTTCTTCGTTTCCTGACTGAACCTACCGGTAGTAAGCCTGGTGGAAGGCAGGAGCCATTCCATTGGTGTAAGCTGGCATCCCGTTGCCATAGCCGCCGTA
GGGGGCAGCAGGGTAGCTCATGGGCGGGGTGGAGTAGGCCATGGGAATGCCGACGTTGACGGTGGCTACCTCCTCAGCTGGGTAAACATATGGCTCCCTG
ATCACCGGCGGGCTCCGGGTGCAGTACACGCCGTGTCCAACCGGCCTGTCGTAAGGGTAAGGGGAGGGTGTGGCGTATGATGCATGGGTTGGGGAGACTG
TGGCGTATGAGGCGTGGGATGGGGAGGTATTGGCGTATGAGGTGCGGGACGGGGAGGTGTTGGCGTATGACGCGTGGGAGGGAGACTGGGTCAATGTGGT
GGGAGCTGGGAGAGAAGACACGCAAGCATTGTTAGTGAGACGACCTGCCTTGGCAGGAGGCATTGGGCCTCCAGTGCTCGCACGGATGCGCTTGGTTGCA
GGGCCGCCGCTGCCGCCACTGGTAGCGCTTGATGCTGCCTTCTTCTTCTCGGTCTTGGCTTTCTCTAGTTCTTCAAGTTGCTTCCGAAGACCCTCCAGTG
GAAACTCAGCTTCTAGTTTACGATCCTCAACACACTTGATGACAGCTCGCAGTGCAGACTGTTCTTTCTTGTTCACATTGCTC