Detailed information on CNT3032415


BLAST search results

BLAST vs Swiss-Prot:
sp|P05993|PAPA5_CARPA, E-value = 3e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513754Theobroma cacaoJuglans regia52.2753.786.73196forward
CNT3046699Theobroma cacaoPrunus dulcis48.5347.487.91182forward
CNT30163285Theobroma cacaoPistacia vera52.2722.6987.24196forward
CNT30609330Theobroma cacaoGossypium raimondii52.2743.1797.45196forward
CNT30651914Theobroma cacaoRosa chinensis46.436.9486.21174forward
CNT30714668Theobroma cacaoMalus domestica golden4849.5985.56180forward
CNT30571877Theobroma cacaoVitis vinifera45.8743.5484.88172forward
CNT30705577Theobroma cacaoPrunus avium48.5362.7687.91182forward

Expression of CNT3032415

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MHSSRILGNNHRIQKGNSMSHHLDNRRSLHIHLVKEMEAMALTAQTPYGKSVSLFR*

>peptide 2 (33 aa)
ESFLDITNGVITRAAVFSSSTANGIFICTAAVY*

>peptide 3 (49 aa)
MVNQCLFLDRNIHPFPNLFPMNSSLSNNLHHLLSHNQLSKQHDQCHLDCP

Sequence

>CNT3032415
AGAGTCCTTCTTGGACATCACAAATGGGGTAATCACTAGGGCAGCAGTATTCAGTTCCAGTACAGCAAACGGCATTTTCATATGCACAGCAGCCGTATAT
TAGGCAATAATCATAGAATTCAAAAAGGCAACAGCATGTCTCATCACTTGGACAATAGGAGAAGTCTCCACATTCACTTGGTGAAGGAGATGGAGGCCAT
GGCATTGACAGCGCAGACACCATATGGTAAATCAGTGTCTCTTTTTAGATAGAAATATCCATCCATTCCCCAACTTGTTCCCCATGAATTCTTCACTATC
CAATAATCTTCACCATCTTCTGAGCCATAACCAACTATCAAAACAGCATGATCAATGTCATCTGGATTGTCCGAG