CANTATAdb - search

Detailed information on CNT30163285

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONTCAT002529, E-value = 1e-73

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3046701	Pistacia vera	Prunus dulcis	20.14	36.48	85.06	174	forward
CNT30652139	Pistacia vera	Rosa chinensis	20.72	41.44	83.8	179	forward
CNT30714668	Pistacia vera	Malus domestica golden	18.98	45.18	80.49	164	forward
CNT30705577	Pistacia vera	Prunus avium	19.68	58.62	83.53	170	forward
CNT3032415	Pistacia vera	Theobroma cacao	20.6	47.47	87.08	178	forward

Expression of CNT30163285

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MLFTHLAHCSELVPLPLERFVYLPLLCFLIFSPWELVLSHLFLLCCYSQTSCFI*

>peptide 2 (29 aa)
MEIPINKLKKQLFPLLSFQFRQLHTFNFH*

>peptide 3 (72 aa)
MNNSHRSGSNQRIHIGNNMSHHLGNMRSPHIHLVKAREVVGMVEVVVAVAVMVVAVRELVQMILWSDKRPLH*

Sequence

>CNT30163285
TTACAGTCTGAAAAACAATGCTGAGATGGCTTGCATTTGAACAATCTTACAAGCCAGGACATCTAAATGAAACATAGTTATACCAAATGGAAATTCCAAT
AAACAAGCTAAAGAAACAACTCTTTCCCCTTTTATCTTTCCAGTTTCGCCAGCTGCATACGTTTAATTTCCATTAAAACATATGTCCAATGCAGACTCAG
AGAATGAATGTCCCTGTGAGGAAAAAAAAATGAAATAGCAAGAGTGACACAACCATCAAACTTCAAAGAGACTAAAAATGTTGTTCACTCATTTAGCGCA
TTGCAGCGAACTGGTTCCTCTTCCACTGGAGAGGTTCGTATATCTTCCTCTTCTCTGCTTCCTCATATTTAGTCCATGGGAGCTTGTGCTTAGCCATCTT
TTTCTTCTTTGCTGCTATTCCCAGACTTCTTGTTTTATTTAGGTAGAATTTTCATACCTTGAGGCAGAGCCCTTCTTCCACATCGCAAATAGGATAATCA
CTGGGGCAGCAGTACTCAGTTCCAGTACAGCACACAGCATTTTCATATGAACAACAGCCATAGATCAGGCAGTAATCAAAGAATTCATATAGGCAACAAC
ATGTCTCATCACTTGGGCAATATGAGAAGTCCCCACATTCACTTGGTGAAGGCGAGGGAGGTGGTGGGGATGGTGGAGGTGGTGGTGGCGGTGGCGGTGA
TGGTGGTGGCGGTGAGGGAGCTGGTGCAGATGATTCTTTGGTCGGATAAGAGGCCATTGCATTGACCGCACATTCACCATATTCTAAGTCTGTGTTCCTT
TTAAGGTAGAAATATCCGTCCATTCCCCAACTTGTTCCCCAAGAATTCTTTACAATCCAATAAT