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Detailed information on CNT30609330


BLAST search results

BLAST vs Swiss-Prot:
sp|P25777|ORYB_ORYSJ, E-value = 1e-38

BLAST vs NONCODE:
NONTCAT002529, E-value = 7e-104

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513539Gossypium raimondiiJuglans regia46.756.6885.85212forward
CNT3046701Gossypium raimondiiPrunus dulcis46.9244.6587.32213forward
CNT30163293Gossypium raimondiiPistacia vera96.9296.4982.95440forward
CNT30562260Gossypium raimondiiActinidia chinensis15.6420.7685.9271forward
CNT30652619Gossypium raimondiiRosa chinensis93.8392.2183.33426forward
CNT30714668Gossypium raimondiiMalus domestica golden43.6154.5585.86198forward
CNT30571839Gossypium raimondiiVitis vinifera53.5255.9982.72243forward
CNT30705576Gossypium raimondiiPrunus avium43.1742.0687.24196forward
CNT3032415Gossypium raimondiiTheobroma cacao43.1752.2797.45196forward

Expression of CNT30609330

Peptides detected in this lncRNA

>peptide 1 (36 aa)
LEAESFLDITNGVITRAAVFSSSTANSIFIFTAAVY*

>peptide 2 (40 aa)
MSHHLNNRKSLHNHLVKEMEVVVAVEEHLAMDKGMVKRIV*

>peptide 3 (48 aa)
MVNQCLFLDRNIHLSPNLFPMNSSLSNTLHCLLNHNQLLKQHDQCHLDH

Sequence

>CNT30609330
CTTGAGGCAGAGTCCTTCTTGGACATCACAAATGGGGTAATCACTAGGGCAGCAGTATTCAGTTCCAGTACAGCAAACAGCATTTTCATATTCACAGCAG
CCGTATATTAGGCAATAATCATAGAATTCAAAAAGGCAACAGCATGTCTCATCACTTGAACAATAGGAAAAGTCTCCACAATCACTTGGTGAAGGAGATG
GAGGTGGTGGTGGCGGTGGAGGAACACTTGGCGATGGATAAGGGGATGGTGAAGAGGATTGTTTAGTTGGATAAGAAGCCATGGCATTGACAGCACAAAC
ACCATATGGTAAATCAGTGTCTCTTTTTAGATAGAAATATCCATCTATCCCCCAACTTGTTCCCCATGAATTCTTCACTATCCAATACTCTTCACTGTCT
TCTGAACCATAACCAACTATTAAAACAGCATGATCAATGTCATCTGGATCATCC