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Detailed information on CNT30714668


BLAST search results

BLAST vs Swiss-Prot:
sp|P25777|ORYB_ORYSJ, E-value = 3e-22

BLAST vs NONCODE:
NONTCAT002529, E-value = 3e-41

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30163285Malus domestica goldenPistacia vera46.8319.6881.18170forward
CNT30609330Malus domestica goldenGossypium raimondii48.7638.9985.31177forward
CNT30705577Malus domestica goldenPrunus avium48.4860.6986.93176forward
CNT3032415Malus domestica goldenTheobroma cacao48.7647.285.31177forward

Expression of CNT30714668

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MFDQMDSRRSPHNHLVTEMVVVVVVAVVTAAQEVGVERLGKVQMTLW*

>peptide 2 (63 aa)
LETEALRDITNGVITRAAVFSSSAANRILIVAATIDEAEAIKFIKATACLIRWTVGEVPTITW*

Sequence

>CNT30714668
CTTGAGACAGAGGCCCTCAGAGACATCACAAATGGGGTAATCACTCGGGCAGCAGTATTCAGTTCCAGTGCAGCAAACCGCATTCTGATAGTCGCAGCAA
CCATAGATGAGGCAGAAGCCATAAAATTCATAAAGGCAACAGCATGTTTGATCAGATGGACAGTAGGAGAAGTCCCCACAATCACTTGGTGACGGAGATG
GTGGTGGTGGTGGTGGTGGCGGTGGTGACGGCGGCGCAGGAGGTGGGGGTGGAGAGGCTGGGGAAGGTGCAGATGACTCTTTGGTAGGATATGAAGCCAT
GGCGTTGATTGCACAAACCCCATATGTTAAACTAGTGTTCCTTCTAATGTAAATGTATCCATC