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Detailed information on CNT30705577


BLAST search results

BLAST vs Swiss-Prot:
sp|P43297|RD21A_ARATH, E-value = 1e-20

BLAST vs NONCODE:
NONTCAT002529, E-value = 9e-47

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513539Prunus aviumJuglans regia62.4148.482.32181forward
CNT30163285Prunus aviumPistacia vera69.3123.2684.08201forward
CNT30714668Prunus aviumMalus domestica golden60.6948.4886.93176forward
CNT3032415Prunus aviumTheobroma cacao62.7648.5387.91182forward

Expression of CNT30705577

Peptides detected in this lncRNA

>peptide 1 (62 aa)
QAETIINITNGVIIWATVFSSGAANRILIFTATIDEAVVKEFKEATTCLITWTIGEVSAVTW*

>peptide 2 (49 aa)
MSHHLDNRRSLRSHLVKEREVPLEILKPPLTLFSMPIHLSMLLLPEPEKL

>peptide 3 (34 aa)
GRDHHQHHKWGNHLGNSIQFRCSKPHSDIHSNHR*

Sequence

>CNT30705577
CAGGCAGAGACCATCATCAACATCACAAATGGGGTAATCATTTGGGCAACAGTATTCAGTTCCGGTGCAGCAAACCGCATTCTGATATTCACAGCAACCA
TAGATGAGGCAGTAGTCAAGGAATTCAAAGAGGCAACAACATGTCTCATCACTTGGACAATAGGAGAAGTCTCCGCAGTCACTTGGTGAAGGAGAGGGAG
GTTCCTCTTGAAATTCTCAAACCTCCTCTCACTCTCTTCAGCATGCCTATACACCTTTCCATGCTTCTGCTTCCAGAGCCTGAAAAGCTC