Detailed information on CNT30651914


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LT78|RD21C_ARATH, E-value = 3e-45

BLAST vs NONCODE:
NONTCAT002529, E-value = 2e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534676Rosa chinensisEucalyptus grandis21.2335.9782100forward
CNT3046699Rosa chinensisPrunus dulcis33.1240.6291.03156forward
CNT30714323Rosa chinensisMalus domestica golden45.8662.0787.5216forward
CNT30571877Rosa chinensisVitis vinifera43.7452.1582.04206forward
CNT30705582Rosa chinensisPrunus avium44.5948.2887.14210forward
CNT3032415Rosa chinensisTheobroma cacao33.5542.1386.08158forward

Expression of CNT30651914

Peptides detected in this lncRNA

>peptide 1 (63 aa)
LKTQAFLDITNGIVTWTAVFSSSAANRILIFTATINQAVVKEFIEATTCLISWTIGEVSALAW*

>peptide 2 (39 aa)
MSHQLDNRRSLRIGLVKERVVVVVEELEMDKERVQLTLW*

>peptide 3 (36 aa)
MNSLQSSNLHRFQNHILLLERHDQCHLDRRSNHRHKF

Sequence

>CNT30651914
CTTAAGACACAGGCCTTCCTCGATATCACAAATGGGATAGTCACTTGGACAGCAGTATTCAGTTCCAGTGCAGCAAACCGCATTCTCATATTCACAGCAA
CCATAAATCAAGCAGTAGTCAAAGAATTCATAGAGGCAACAACATGTCTCATCAGCTGGACAATAGGAGAAGTCTCCGCATTGGCTTGGTGAAGGAGAGG
GTGGTGGTGGTGGTGGAGGAGTTGGAGATGGATAAGGAGAGGGTGCAACTGACTCTTTGGTAGGATATGAAGCCATGGCATTGACTGCACAAACCCCATA
TGGCAAATCGGTGTTCCTTCTGAGGTAAAAGTATCCTTCAATCCCCCAACTAGTTCCCCATGAATTCTTTACAATCCAGTAATCTTCACCGTTTTCAGAA
CCATATCCTACTATTAGAACGGCATGATCAATGTCATTTGGATCGTCGGAGCAATCACCGTCATAAATTCC