Detailed information on CNT30571877


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LT78|RD21C_ARATH, E-value = 2e-34

BLAST vs NONCODE:
NONTCAT002529, E-value = 3e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3046701Vitis viniferaPrunus dulcis51.942.9881.95205forward
CNT30163286Vitis viniferaPistacia vera87.8587.6380.12347forward
CNT30651914Vitis viniferaRosa chinensis58.2348.8381.74230forward
CNT30714323Vitis viniferaMalus domestica golden51.6558.6281.86204forward
CNT30705576Vitis viniferaPrunus avium51.943.9980.49205forward
CNT3032415Vitis viniferaTheobroma cacao43.5445.8784.88172forward

Expression of CNT30571877

Peptides detected in this lncRNA

>peptide 1 (39 aa)
CSKRRSRIHSSRRSGKNHRTHICNSKSHRSGNRKSHRTH*

>peptide 2 (55 aa)
AANGVLVFTAAVDQAKIIELIYATASLIARAIGKVTALTRGRARRGRCWGWIRRW*

>peptide 3 (56 aa)
MVNQCSSLCRSTPPFPSLFPMNSYKSSSLHYLQSHSQLSELHGQCHLDHPSNPQHIF

Sequence

>CNT30571877
GTGCAGCAAACGGCGTTCTCGTATTCACAGCAGCCGTAGATCAGGCAAAAATCATAGAACTCATATATGCAACAGCAAGTCTCATCGCTCGGGCAATAGG
AAAAGTCACCGCACTCACTAGGGGAAGGGCCAGGAGAGGGAGGTGCTGGGGATGGATAAGGAGATGGTGAAGAAGACTCTTTGGTCGGATAGGAAGCCAT
GGCATTGATGGCGCATTCTCCATATGGTAAATCAGTGTTCCTCTTTATGTAGAAGTACCCCTCCATTCCCCAGCTTGTTCCCCATGAATTCTTACAAATC
CAGTAGTCTTCACTATCTTCAGAGCCATAGCCAACTATCAGAACTGCATGGTCAATGTCATCTGGATCATCCGAGCAATCCCCAGCATATATTCC