Detailed information on CNT30513754


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LT78|RD21C_ARATH, E-value = 3e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30269299Juglans regiaChenopodium quinoa20.8213.8986.8476forward
CNT3046701Juglans regiaPrunus dulcis57.2643.8283.25209forward
CNT30163297Juglans regiaPistacia vera67.435.483.33246forward
CNT30652731Juglans regiaRosa chinensis56.1643.5281.95205forward
CNT30714323Juglans regiaMalus domestica golden44.9347.1382.93164forward
CNT30571929Juglans regiaVitis vinifera73.771.9381.04269forward
CNT30705582Juglans regiaPrunus avium89.5975.1781.35327forward
CNT3032415Juglans regiaTheobroma cacao53.752.2786.73196forward

Expression of CNT30513754

Peptides detected in this lncRNA

>peptide 1 (55 aa)
LETEPFFDITKGIITWAAVLSSRTANGILIWTATIDQAKTIEFKYTAARFITRTI*

>peptide 2 (33 aa)
MLNWCSFLCICIPRFPILSPMNSSLSNNPHHLQN

>peptide 3 (35 aa)
MALMAQTPYVKLVFLLMYMYPSIPHSVPHEFFTIQ*

Sequence

>CNT30513754
CTTGAGACAGAGCCCTTCTTCGATATCACAAAGGGGATAATCACTTGGGCAGCAGTACTCAGTTCCAGAACAGCAAACGGCATTCTCATATGGACAGCAA
CCATAGATCAGGCAAAAACCATAGAATTCAAATATACAGCAGCACGTTTCATCACTAGGACAATATGAGAAGTCTCCACATTCACTTGGTGTAGGAGAAG
GAGGAGGTGAAGAAGACTCTTTAGTTGGATAGGAAGCCATGGCATTAATGGCGCAGACTCCATATGTTAAATTGGTGTTCCTTCTTATGTATATGTATCC
CTCGATTCCCCATTCTGTCCCCCATGAATTCTTCACTATCCAATAATCCTCACCATCTTCAGAAC