Detailed information on CNT30575876


BLAST search results

BLAST vs Swiss-Prot:
sp|B8ANF1|CHLH_ORYSI, E-value = 4e-113

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676548Oryza barthiiSetaria viridis23.1565.9284.35147forward
CNT30514102Oryza barthiiJuglans regia29.1320.7485.41185forward
CNT30712554Oryza barthiiGlycine max25.0443.3283.02159forward
CNT30552959Oryza barthiiOryza glaberrima18.4353.92100117forward
CNT30133288Oryza barthiiLolium perenne36.0632.3487.34229forward
CNT30619939Oryza barthiiCajanus cajan56.5442.6479.11359forward
CNT3031792Oryza barthiiTheobroma cacao28.1944.4280.45179forward

Expression of CNT30575876

Peptides detected in this lncRNA

>peptide 1 (37 aa)
GRPSSSRLTGSTRLTRPKVSATGRTPIIHSTWANDSP*

>peptide 2 (79 aa)
MLSVPHKTSAIVSGYLPPLSTFCRSSRRSTTILALFKSMDILPCRENLRVTDWITTRARFNIASLEGKFQASQLIICHN*

>peptide 3 (70 aa)
MNLVLDKCCTHGSDKPKPSMVLSLFVTSTTCPLLFVVLSTKAVMAPREASVICLNSSTSASIPLSLPLYTS

>peptide 4 (34 aa)
GTSKLLKADRFHTVDTAKGVSNRAHTNHPQHLGQ*

Sequence

>CNT30575876
TGGGACGTCCAAGCTCCTCAAGGCTGACAGGTTCCACACGGTTGACACGGCCAAAGGTGTCAGCAACCGGGCGCACACCAATCATCCACAGCACCTGGGC
CAATGACTCACCATAGGTCTTGATGTTATCGGTGCCCCACAAGACAAGTGCAATTGTCTCAGGATACTTGCCACCATTGTCAACCTTTTGCCGCTCCAGC
AGACGGTCTACAACAATTTTGGCGCTCTTCAAGAGCATGGATATTCTTCCCTGTCGGGAGAACCTTCGGGTTACGGATTGGATCACCACCAGGGCCAGGT
TCAACATAGCTTCCCTCGAGGGCAAGTTTCAAGCTTCCCAGCTCATTATCTGCCACAATTAGCTTCAAGCATTCTCCCAAGAAAGTAAACAAGGTTCTCA
ATTTCTCTCTGTCTGCTCTGATGAACTTGGTCTTGGACAAGTGTTGTACCCATGGTTCTGATAAACCAAAACCAAGCATGGTACTAAGTTTGTTTGTAAC
ATCAACAACTTGCCCTTTGTTGTTTGTAGTCCTCTCAACAAAGGCAGTGATGGCACCACGTGAAGCTTCTGTTATCTGCCTCAACAGTTCAACATCCGCC
AGTATTCCCTTGTCACTTCCTCTGTACACATCTTC