CANTATAdb - search

Detailed information on CNT30311416

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF87|CB24_ARATH, E-value = 1e-145

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30373962	Camelina sativa	Arabidopsis thaliana	65.76	58.39	87.1	651	forward
CNT30238958	Camelina sativa	Brassica oleracea	47.78	53.63	90.49	473	forward
CNT3077068	Camelina sativa	Brassica juncea	66.87	65.22	89.58	662	forward
CNT30264606	Camelina sativa	Brassica rapa	54.04	62.43	90.84	535	forward
CNT30612591	Camelina sativa	Arabis alpina	66.26	82.21	90.24	656	forward
CNT30480205	Camelina sativa	Arabidopsis halleri	54.85	71.92	93.92	543	forward
CNT30119392	Camelina sativa	Citrus clementina	41.92	45.16	82.41	415	forward
CNT30114814	Camelina sativa	Eutrema salsugineum	65.15	78.28	90.08	645	forward

Expression of CNT30311416

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MFVLKVGTWYDGVFSENGPRYLDGQYLMQISRMRISDLNANFWPKRGYGTKISYI*

>peptide 2 (41 aa)
MFLDQRRDRLYPSHSLQGILLLGMMVCFPRMVLGIWDGLVRT

Sequence

>CNT30311416
GACTTTCTAGCAACTGACTGTACCACTCAGTGACTCAAAACATGAAAATTACACTTGCCGAACCGCCGAAGGAAGCAAGACTATGAAAATATCCGGTTTC
ACATTCTCATATGTTTGTACTAAAAGTTGGTACTTGGTATGATGGTGTGTTTTCCGAGAATGGTCCTAGGTATTTGGATGGGCAATATTTAATGCAGATA
TCTCGGATGCGAATTTCCGACCTTAATGCAAATTTCTGGCCAAAGCGAGGATATGGAACCAAAATATCATATATTTAGGGATACTTAAATGCATTGATAA
ATGTTATAACTTTACATAAATGATCCGATCAAACTCTATTTTCCGGGGACGAAGTTGGTGGCGAAAGCCCAAGCATTGTTAGCCACAGGGTCTGCGATAT
GATCGAACAGGTTCTCGATCGGACCTTTACCCGTAACAATGGCTTGAACAAAGAATCCAAACATTGAGAACATTGCAAGACGACCGTTCTTGAGCTCCTT
CACCTTCAATTCGGAGAAAGCCTCTGGATCCTCTGCTAGGTTCAACGGGTCAAACGCCCCGCCTGGGTAAAGCGGGTCAAGTCCTTCACCAAGAGGACCA
CCTCCGATTCTGTATCCTTCAATGAAACCCATGAGCACAACTTGACATGCCCAGATAGCCAATATGCTTTGCGCATGGATCAAGTTAGGGTTTCCTAGGT
AGTCAAGCCCTCCTTCTGAGAAGATCTGAGATCCCGCCTTGAACCACACGGCTTCACCGAATTTGACTCCGTTTTTGGAGAGGATCTCCGGGAAGGTGCA
GCCCAAAGCACCCAACATTGCCCATCTACTGTGGATTACTTCGAGCTCACGGTTCTTTGCGAATGTTTCTGGATCAGCGGAGAGACCGGCTGTATCCCAG
CCATAGTCTCCAGGGTATTCTCCTGTTAGGTATGATGGTGTGTTTTCCGAGAATGGTCCTAGGTATTTGGGACGGTCTGGTCCGTACCTG