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Detailed information on CNT30373962


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7J7|CB22_ARATH, E-value = 2e-135

BLAST vs NONCODE:
NONATHT001041, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701229Arabidopsis thalianaQuercus lobata58.6533.6480.12654forward
CNT30311416Arabidopsis thalianaCamelina sativa58.3965.7687.1651forward
CNT3077068Arabidopsis thalianaBrassica juncea57.8563.5588.53645forward
CNT30612591Arabidopsis thalianaArabis alpina58.2181.3386.44649forward
CNT30480205Arabidopsis thalianaArabidopsis halleri48.771.9288.4543forward
CNT30360562Arabidopsis thalianaLactuca sativa33.941.4983.6378forward
CNT30114814Arabidopsis thalianaEutrema salsugineum57.9478.487.62646forward

Expression of CNT30373962

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MVTRPPPDTPTLRRSSLEGLRAVWPAKEDCWIADVAIIVIFSLTTMKGKEIRESVSYG*

>peptide 2 (40 aa)
PRNIIKCQIHIKRQYYTITSLQSREIMKQIHKIITFRGQS*

>peptide 3 (50 aa)
MGPLPVTMAWTKNPNIENMARRPFLSSFTFSSEKASGSSAKFNGSNAPPG*

>peptide 4 (53 aa)
MSPGQPRVQRCPSRSLRGILRLGRTVYSPRMVLSTWDGLVRTCYKMNLVIRHI*

Sequence

>CNT30373962
TCCCAAGAAACATCATTAAGTGCCAAATTCACATCAAACGTCAATATTACACAATCACGAGTTTACAAAGCAGAGAGATTATGAAGCAAATACATAAGAT
AATTACTTTCCGGGGACAAAGTTAGTAGCGTAAGACCAGGCGTTGTTAGCCACAGGATCAGCCAAATGATCAAATAAGTTCTCAATGGGACCTTTACCAG
TAACAATGGCTTGGACAAAGAATCCAAACATAGAGAACATGGCAAGACGACCGTTCTTGAGCTCCTTCACCTTCAGCTCAGAGAAAGCCTCTGGATCCTC
AGCCAAGTTCAATGGGTCGAACGCACCTCCGGGATAAAGCGGGTCAAGTCCTTCTCCGAGTCCACCTCCGATTCTGTAGCCTTCAATGAACCCCATGAGC
ACAACTTGAACAGCCCAGATGGCTAAGATGCTTTGCGCGTGGATCAAGTTAGGGTTTCCGAGGTAATCAAGACCTCCTTCTGAGAAAATCTGAGAACCTG
CCTTGAACCACACGGCTTCTCCGAATTTAACACCGTTCTTGGAGAGAATCTCAGGGAATGTGCATCCGAGAGCACCCAACATAGCCCATCTGCTGTGGAT
TACTTCAAGCTCACGGTTCTTAGCGAATGTCTCCGGGTCAGCCGAGAGTCCAGCGGTGTCCCAGCCGTAGTCTCCGGGGTATTCTCCGGTTAGGTAGGAC
GGTGTATTCTCCGAGAATGGTCCTAAGTACTTGGGACGGTCTGGTCCGTACCTGTTACAAGATGAATTTGGTGATTAGACATATCTGAAAAGTTAATGAT
AGGTTAGGTAAGAGCCAGAGAGAGTGGATTTGGTACCAGATGCTTTGAGGAGTAGACTTGACGGTACGACGCATGGTCACACGGCCACCACCGGATACAC
CAACCTTGCGGAGGAGTTCGTTGGAGGGCTTGAGAGCCGTTTGGCCGGCGAAGGAGGATTGCTGGATAGCTGATGTTGCCATTATCGTAATCTTTTCGTT
AACTACAATGAAAGGAAAGGAGATAAGAGAGAGTGTGAGTTATGGATGAGATGGTGAAACCAATATGGTTTTATAACAGAGAAGGCGTTCATGTTAGAGG
GTTATCAAATGTACA