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Detailed information on CNT30114814


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SHR7|CB21_ARATH, E-value = 7e-143

BLAST vs NONCODE:
NONATHT001041, E-value = 2e-179

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701229Eutrema salsugineumQuercus lobata78.8833.4479.08650forward
CNT30373962Eutrema salsugineumArabidopsis thaliana78.457.9487.62646forward
CNT3070976Eutrema salsugineumQuercus suber44.5472.2482.02367forward
CNT30378978Eutrema salsugineumManihot esculenta71.8451.6177.36592forward
CNT30631012Eutrema salsugineumVigna unguiculata77.7950.4778.94641forward
CNT30708305Eutrema salsugineumGlycine max35.0735.7780.97289forward
CNT30543607Eutrema salsugineumBrassica napus51.2179.6293.36422forward
CNT30234046Eutrema salsugineumBrassica oleracea68.6997.7589.75566forward
CNT30311416Eutrema salsugineumCamelina sativa78.2865.1590.08645forward
CNT3077068Eutrema salsugineumBrassica juncea95.8777.8391.65790forward
CNT30264606Eutrema salsugineumBrassica rapa62.8660.4492.47518forward
CNT30612591Eutrema salsugineumArabis alpina78.7681.3391.83649forward
CNT30605341Eutrema salsugineumGossypium raimondii54.1340.8878.48446forward
CNT30480205Eutrema salsugineumArabidopsis halleri86.0493.9189.84709forward
CNT30409807Eutrema salsugineumPapaver somniferum57.7764.5979.41476forward
CNT3028352Eutrema salsugineumTheobroma cacao26.4623.5782.11218forward
CNT30119392Eutrema salsugineumCitrus clementina50.3645.1680415forward
CNT3036398Eutrema salsugineumCucumis melo2131.2383.24173forward

Expression of CNT30114814

Peptides detected in this lncRNA

>peptide 1 (64 aa)
RDEVGGVRPGIVSHRVRKMIEEILDRTFTSNNGLNKESKHREHCKTTVLELLHFQFRKRLWILR*

>peptide 2 (39 aa)
MTTRPPPLEAPTLRRRSLEGLRAVWPANEECWIADVAIL*

>peptide 3 (47 aa)
MGQTLHRGKVGQALHQEAHLRFCTLQLSPSTQLEKPIWLRCFARGSS*

>peptide 4 (51 aa)
MVLSTWDGLVRTCHVWSRLDGTAHDDAATAVGSSNFAEEIVGGLEGRLAGE*

Sequence

>CNT30114814
CCAGGGACGAAGTTGGTGGCGTAAGACCAGGCATTGTTAGCCACAGGGTCCGCAAGATGATCGAAGAGATTCTCGATCGGACCTTTACCAGTAACAATGG
CTTGAACAAAGAATCCAAACATAGAGAACATTGCAAGACGACCGTTCTTGAGCTCCTTCACTTTCAATTCCGAAAACGCCTCTGGATCCTCCGCTAAGTT
CAATGGGTCAAACGCTCCACCGGGGTAAAGTGGGTCAAGCCCTTCACCAAGAGGCCCACCTCCGATTCTGTACCCTTCAATTAAGCCCATCAACACAACT
TGAGAAGCCCATATGGCTAAGATGCTTTGCGCGTGGATCAAGTTAGGGTTTCCGAGGTAATCAAGTCCTCCTTCGGAGAAGATCTGAGATCCTGCCTTGA
ACCACACGGCTTCACCGAACTTGACTCCGTTTTTGGAGAGAATCTCTGGGAAGGTGCAGCCTAAAGCGCCTAGCATTGCCCATCTACTGTGGATCACTTC
GAGCTCACGGTTCTTTGCAAACGTTTCTGGGTCGGCGGATAGACCGGCGGTGTCCCAACCGTAGTCTCCGGGGTATTCTCCGGTTAGGTACGACGGTGTG
TTTTCTGAGAATGGTCCTAAGTACTTGGGACGGTCTGGTCCGTACCTGTCACGTGTGGAGTAGACTTGACGGTACGGCGCATGACGACGCGGCCACCGCC
GTTGGAAGCTCCAACTTTGCGGAGGAGATCGTTGGAGGGCTTGAGGGCCGTTTGGCCGGCGAATGAAGAGTGTTGGATTGCTGACGTGGCCATTCTTTGA
ATCTGAGATGATGTGATGTTGGTG