« Back to Arabidopsis halleri search


Detailed information on CNT30480205


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF87|CB24_ARATH, E-value = 2e-117

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701193Arabidopsis halleriQuercus lobata69.9341.9479.73528forward
CNT30373962Arabidopsis halleriArabidopsis thaliana71.9248.788.4543forward
CNT30378916Arabidopsis halleriManihot esculenta66.2338.9778.4500forward
CNT30631012Arabidopsis halleriVigna unguiculata66.7539.6979.76504forward
CNT30711475Arabidopsis halleriGlycine max52.0526.9580.15393forward
CNT3085816Arabidopsis halleriVigna radiata43.7151.7278.79330forward
CNT30543607Arabidopsis halleriBrassica napus56.2980.1992425forward
CNT30234046Arabidopsis halleriBrassica oleracea74.396.8988.41561forward
CNT30172025Arabidopsis halleriTrifolium pratense65.5642.8980495forward
CNT30311416Arabidopsis halleriCamelina sativa71.9254.8593.92543forward
CNT3077068Arabidopsis halleriBrassica juncea93.5169.5688.95706forward
CNT30264606Arabidopsis halleriBrassica rapa56.2949.5992425forward
CNT30612591Arabidopsis halleriArabis alpina71.9268.0591.9543forward
CNT30605341Arabidopsis halleriGossypium raimondii49.5434.2879.41374forward
CNT30625449Arabidopsis halleriDaucus carota26.0921.4182.23197forward
CNT30410959Arabidopsis halleriPapaver somniferum66.0956.1379.36499forward
CNT30326027Arabidopsis halleriAsparagus officinalis43.3157.4781.65327forward
CNT30119392Arabidopsis halleriCitrus clementina52.1942.8780.71394forward
CNT30114814Arabidopsis halleriEutrema salsugineum93.5185.6889.8706forward

Expression of CNT30480205

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MLLDPPLSSTGQTLRQGKVGQVLHQEAHLRFCTLQ*

>peptide 2 (53 aa)
MTTRPPPLEAPTLRMRSLDGFRVVWPAKEECWIAEVAILFFLNSKQKHKGIRD*

>peptide 3 (86 aa)
MFLDQLRDRRCPSRSLQGILQLGMMVCFPRMVLGIWDGLEPDALRRRLDCTAHDDAAATIGGSDLTNEIVGWLQGRLAGERGVLDC*

Sequence

>CNT30480205
GTAACAATGGCTTGAACAAAGAATCCAAACATTGAGAACATCGCAAGACGACCGTTTTTGAGCTCCTTCACCTTCAATTCCGAGAATGCTTCTGGATCCT
CCGCTAAGTTCAACGGGTCAAACGCTCCGCCAGGGTAAAGTGGGTCAAGTCCTTCACCAAGAGGCCCACCTCCGATTCTGTACCCTTCAATGAATCCCAT
TAGCACAACTTGACAAGCCCAAATGGCTAATATGCTTTGCGCGTGGATCAAGTTAGGGTTTCCTAGGTAATCAAGTCCTCCTTCTGAGAAGATCTGTGAT
CCTGCCTTGAACCACACGGCTTCACCGAATTTGACTCCGTTCTTGGAGAGAATCTCTGGGAAGGTGCAGCCTAAAGCGCCCAACATTGCCCATCTACTGT
GGATTACTTCGAGCTCACGGTTCTTTGCGAATGTTTCTGGATCAGCTGAGAGACCGGCGGTGTCCCAGCCGTAGTCTCCAGGGTATTCTCCAGTTAGGTA
TGATGGTGTGTTTTCCGAGAATGGTCCTAGGTATTTGGGACGGGTTGGAACCAGATGCTCTGAGGAGAAGACTTGACTGTACGGCGCATGACGACGCGGC
CGCCACCATTGGAGGCTCCGACCTTACGAATGAGATCGTTGGATGGCTTCAGGGTCGTTTGGCCGGCGAAAGAGGAGTGTTGGATTGCTGAAGTTGCCAT
TCTTTTTTTTTTAAACTCCAAACAAAAACACAAAGGAATAAGAGATTAGTGTGTA