« Back to Triticum aestivum search


Detailed information on CNT30307334


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696704Triticum aestivumOryza sativa27.9626.492.9485reverse complement
CNT30185912Triticum aestivumSecale cereale92.7610095.74282reverse complement
CNT30398345Triticum aestivumTriticum turgidum97.0497.3695.93295reverse complement
CNT30443397Triticum aestivumAegilops tauschii10010097.37304forward
CNT30669121Triticum aestivumTriticum dicoccoides99.0199.0195.68301forward
CNT3067608Triticum aestivumLeersia perrieri72.771.7587.33221forward
CNT30596339Triticum aestivumOryza meridionalis41.1231.2594.4125reverse complement
CNT30369610Triticum aestivumOryza glumipatula101.3275.1284.74308reverse complement
CNT30100780Triticum aestivumOryza rufipogon100.9955.2286.32307reverse complement
CNT30116196Triticum aestivumOryza nivara101.3258.7886.04308forward

Expression of CNT30307334

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MDAVVELRAWSGCAIAGPPVPSCVVDRLGPMRKLGLTIHNVAGIA*

Sequence

>CNT30307334
GCCGAGCTTAGTTGCGAGAGCTTGTAACCCGAGTGGGGGCATTAAGGTGATATGGACGCTGTTGTAGAGCTGCGGGCCTGGTCTGGGTGTGCTATTGCTG
GCCCGCCCGTTCCAAGTTGCGTAGTGGACCGGTTGGGGCCTATGCGAAAGCTGGGCCTCACGATCCATAATGTGGCAGGCATAGCGTGAGGCTGGCTTCA
CAGAGCAGCGACAACTGCCCGCTTCCAACGGTGGAAGGATAACGGGCCGCTGCACTCCTGGCCCGCTTGGGCCTCGCAGCCTACTCCAACGAACCATCAC
TTTT