Detailed information on CNT30100780


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30307334Oryza rufipogonTriticum aestivum53.7898.3686.29299reverse complement
CNT30443397Oryza rufipogonAegilops tauschii52.8896.7186.39294reverse complement
CNT30369610Oryza rufipogonOryza glumipatula62.5984.8897.7348forward
CNT30148640Oryza rufipogonBrachypodium distachyon54.1498.6986.05301reverse complement
CNT30575771Oryza rufipogonOryza barthii100.3692.3898.03558reverse complement
CNT30116196Oryza rufipogonOryza nivara90.8396.3799.01505reverse complement

Expression of CNT30100780

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MPATLGKREARAFAQAPPAQLRNLERAGHLWHCQPRPAAIRQRPHHLNAPARVTSSRC*

>peptide 2 (33 aa)
MKCTNTYKLDFYRSRIPVFMIRKDGLHAWQQVS*

>peptide 3 (31 aa)
GLDSTTNSPALVFFCSIELFTTKCTNTFFFR*

Sequence

>CNT30100780
AGGACTTGATTCAACGACAAATTCACCAGCTTTAGTTTTTTTTTGTTCCATCGAATTGTTTACAACAAAGTGTACAAATACATTCTTTTTTAGATAATGA
AGTGTACAAATACATACAAGTTGGATTTTTACCGCTCAAGAATACCCGTGTTCATGATCCGTAAAGACGGCCTACATGCGTGGCAGCAAGTCAGTTAGAG
GTAAATTCAGGCAAACAAGATGGGAAAATAATAATAAAAAAAGTGGTGGTCCGTTGGAGTAGGCTGCGAGACCCAAGCGGGCCAGCAGTGCGGCGGCCCG
TTATCCTTCCACCGTTGGAAGCGGACAGTATTCGCTGCTCTGTGAAGCCAGCCTCACGCAATGCCTGCCACTCTAGGGAAACGTGAGGCCAGAGCTTTCG
CTCAAGCCCCGCCGGCCCAACTACGCAACTTGGAACGGGCGGGCCATCTATGGCACTGCCAACCCAGGCCCGCAGCCATACGGCAACGTCCACACCACCT
TAATGCCCCCGCTCGGGTTACAAGCTCGCGCTGCTGAGCTCGGCTGGAGGTGGTGG