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Detailed information on CNT30398809


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 6e-99

BLAST vs NONCODE:
NONMTRT002043, E-value = 2e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30191096Triticum turgidumSecale cereale50.657190.39666forward
CNT30305431Triticum turgidumTriticum aestivum61.0669.7797.63803forward
CNT30226487Triticum turgidumHordeum vulgare35.2175.1692.22463forward
CNT30242408Triticum turgidumAvena sativa35.7463.694.68470forward
CNT30140780Triticum turgidumLolium perenne36.1256.9594.32475forward
CNT30689162Triticum turgidumTriticum urartu57.49100.6798.41756forward

Expression of CNT30398809

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MDESAVILQTHMYLRVESKDSGPVWFISPRAFFSPNL*

>peptide 2 (70 aa)
QDVIATKYHIVELTNARYNIHMNRDEMHQIEANKRKHRITRSCRHNSGLTYLSSSPKLFTTAAILKNNRT*

>peptide 3 (54 aa)
MRRCWSGGMPSLSWILALTLSMVSDDSTSRVMVLPVRVFTKICICKQQSTQNKS*

>peptide 4 (53 aa)
MPSLSWIFAFTLSMVSEDSTSRVMVLPVRVLTKICMPPRRRSTRWRVDSFWML*

Sequence

>CNT30398809
CCAAGATGTAATTGCCACAAAGTACCATATAGTCGAACTAACAAATGCAAGGTACAATATTCATATGAATAGAGATGAAATGCATCAGATAGAAGCAAAC
AAAAGAAAACACAGGATAACTCGCAGCTGCAGACACAATTCAGGGCTCACTTATTTATCAAGTTCACCAAAGCTGTTCACAACAGCAGCAATTCTCAAAA
ACAACCGAACATAACGATGCATCACACTACGGTAGAAACATAGAAACGACCAGGACGACAGACACAGGCACCATTGGAGGACATATCAAAGACACAAGAC
CTGTGAACCCAACCCACAGAGAAGCCGCTCCATTGCCAGGCACTTACTGGCCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTT
ATAGTCCGCCAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATTTTCGCCTTC
ACATTGTCGATGGTGTCAGAGGACTCAACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCATGCCCCCACGAAGGCGGAGCACCA
GGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGAT
GCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATC
TGCATCTGTAAACAACAAAGCACACAGAACAAGAGTTAGAAACCGTACAGAGAAATCTGTAGGAGATCAAACAATAAATGAATCAGATGATACAACAGAG
ATGGAATTGTAACTAAGGAATCCCCTAGAATAAGCAACTAAATGATTAACACTTCTGTAAGAACCCCTATAACAAAATATGAGCAGACTTATCAGCGCAA
TCTCTAGCCTCATGGGGAGTATATATTAATCAGTTGAACAGAACAAGCTGGTCAAGTCATGGACGAATCTGCAGTAATTCTTCAAACCCACATGTATTTA
AGAGTTGAATCAAAAGACTCAGGCCCTGTTTGGTTCATAAGTCCTAGGGCATTTTTTAGTCCCAACTTATAAGTCCCAAGTCCCTAAAAAGTCCCTACCT
GTTTGGTTCCTGGGACTTATAAGTCTCTATAAGACCATATTACAACTATAAGTCCCTATAAGTCCCTCCTTGACAGTCTTATTTCGTAAGTCCCAAATGC
CCACTTTAAGTCCCT