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Detailed information on CNT30291378


BLAST search results

BLAST vs Swiss-Prot:
sp|P25413|RBL_AEGCR, E-value = 7e-62

BLAST vs NONCODE:
NONBRAT006199, E-value = 7e-158

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700759Triticum aestivumQuercus lobata9.4333.0884.8886reverse complement
CNT30618789Triticum aestivumSesamum indicum26.4343.8289.63241forward
CNT30505842Triticum aestivumNicotiana attenuata26.4370.2690.46241forward
CNT3093954Triticum aestivumSolanum tuberosum26.2114.687.87239forward
CNT30225530Triticum aestivumHordeum vulgare3342.797.67301forward
CNT30265789Triticum aestivumBrassica rapa27.8531.3699.61254forward
CNT3018021Triticum aestivumZea mays27.086.3696.36247forward
CNT30627897Triticum aestivumDaucus carota27.5216.6888.05251forward
CNT30360476Triticum aestivumLactuca sativa26.4326.9387.55241forward
CNT3054389Triticum aestivumAmborella trichopoda22.818.5585.58208forward
CNT30149435Triticum aestivumBrachypodium distachyon24.7876.3596.46226forward

Expression of CNT30291378

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MAIHSYHLNTKEEFDPMLYFCLSESRFDIKSILILSQ*

Sequence

>CNT30291378
AACTTCCAAACTATGTCTTTTTTCATTCATTCTCCTTTAGTTTTTTTCTCTATCTAGAAGTGGAATAGAATAACCCGGTTGAAGGGTAATGATCATACGT
CTGTAATGCATTGTATGGCCCAGAATAGGTCCTATTCTTTTACCTTTTCCAGGTAGTCGATGGCTATTCACAGCTACCACCTTAACACCAAAGAAGAGTT
CGACCCAATGCTTTATTTCTGTCTTAGTGAATCCCGATTCGACATTAAAAGTATATTGATTCTTTCCCAATAAACGAAGACTTTTTTCTGTAAATACTGC
GTATTTGATTCCATTATCATATGATAATACTATATTTTATTATTTTATTTGTATTTCTTTATTGTATTATACCTTAATATATATATTCTAGATATATAGA
ATAGACGAATCTCAATTTGTCAAGTCTCATGATCATATCATGATCTATTTTTATTCGGCTCAATCTTTTTTAGAAAAAAAAGATTGAGCCGAGTTTAATT
GCAATCAATTAGAAGAATAAAGAAGAATTACTGCATTTCATAACTTATTTTTTTCTCTTTTTATTTCGTTTCTTTTTTATTTATACCTTCTCTTCTTTAT
CTTTAGTTTTATCTACTTATCAATAGTATCTACCGGCTCGAACTCGAATTTGATCGCCTTCCATACTTCACAAGCTGCGGCTAGTTCAGGACTCCATTTG
CAAGCTGCTCGGATAATTTCATTACCTTCGCGAGCAAGATCGCGCCCTTCGTTACGAGCTTGTACACAGGCTTCTAAAGCCACTCGATTAGCTGCTGCAC
CAGGTGCATTTCCCCAAGGATGTCCTAAAGTTCCTCCACCAAATTGTAATACAGAATCGTCCCCAAAGATTTCGGTCAGAGCTGGCATATGCCAAACATG
NNNNNNNNNNTC