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Detailed information on CNT3054389


BLAST search results

BLAST vs Swiss-Prot:
sp|P60289|RPOC2_AMBTC, E-value = 4e-124

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618789Amborella trichopodaSesamum indicum8.6338.1893.33210forward
CNT30199079Amborella trichopodaPisum sativum21.6150.1490.3526forward
CNT30502432Amborella trichopodaNicotiana attenuata16.846.3295.11409forward
CNT30711743Amborella trichopodaGlycine max4.2736.6286.54104reverse complement
CNT3047786Amborella trichopodaPrunus dulcis4.5620.2292.79111forward
CNT3093954Amborella trichopodaSolanum tuberosum28.0241.6690.62682forward
CNT30177809Amborella trichopodaSecale cereale26.6285.3889.97648forward
CNT30291378Amborella trichopodaTriticum aestivum8.5522.8185.58208forward
CNT30225530Amborella trichopodaHordeum vulgare8.5529.584.13208forward
CNT30586609Amborella trichopodaMusa acuminata15.0850.1489.1367forward
CNT30314546Amborella trichopodaCamelina sativa13.7637.3594.93335forward
CNT3077259Amborella trichopodaBrassica juncea22.4361.2894.87546forward
CNT30265789Amborella trichopodaBrassica rapa26.3879.2689.25642forward
CNT30609661Amborella trichopodaGossypium raimondii15.922.5191.99387forward
CNT30229354Amborella trichopodaAnanas comosus10.6439.3693.82259forward
CNT30717682Amborella trichopodaMalus domestica golden5.0552.3492.68123reverse complement
CNT30625292Amborella trichopodaDaucus carota26.3489.2888.61641forward
CNT30360476Amborella trichopodaLactuca sativa28.3577.0993.62690forward
CNT30149435Amborella trichopodaBrachypodium distachyon11.2292.2386.45273forward
CNT30336185Amborella trichopodaCynara cardunculus6.2424.6886.84152forward
CNT30726607Amborella trichopodaLupinus angustifolius12.926.6688.54314forward

Expression of CNT3054389

Peptides detected in this lncRNA

>peptide 1 (34 aa)
PVMRSFQPSTLFSRFIDIESIERTSNTCSTFGRP*

>peptide 2 (32 aa)
MSIMNCPIIKPVVVDTSFSVPSSITRARRRKR*

>peptide 3 (76 aa)
MYRRVIKYFDLSPFLYKRWNRITRLKRNDHTSVMHSMSHKRSHSSTLSRDRESMTIHSYYLDTKEEFDPMLYFCPS*

>peptide 4 (46 aa)
MPCGNDSSSITTFTTTMLFIDQILSWIRFHLTVYGSIACARGRSFV*

>peptide 5 (45 aa)
LLCVHSSLQPSFLGSSILNQSNELLTLVQLLEDLELYHQILIFHI*

>peptide 6 (42 aa)
MVQTALKGRAFPIDIGTSIPETMVSPIIAPLGCKIYLFSPSP*

>peptide 7 (40 aa)
MHKDNRLPSRKDFKIIRNPLSFFSVALSRLLYDDFLTFHI*

>peptide 8 (36 aa)
MRQMYAFRLGSYSMVTILSDMSFSFRRKSILRYRRL*

>peptide 9 (35 aa)
MRQKRTYFYFHVYVTINRSHFIWFPSIQSTIDRKL*

>peptide 10 (35 aa)
MEKAPIQIEWSQNDVTAWIKIINPSIFIHEIRFRY*

>peptide 11 (29 aa)
MTSLMSMTPKGYSMNGIGIWMEYNEIEPL*

>peptide 12 (29 aa)
MDYPYSVIFYFPLPNEIIQEYTLNAEITH*

>peptide 13 (31 aa)
MNNYNLTRFYAWSVFGYTYIFTKKLSKANYC*

Sequence

>CNT3054389
TCCTGTTATGCGTTCATTCCAGCCTTCAACCCTCTTTTCTAGGTTCATCGATATTGAATCAATCGAACGAACTTCTAACACTTGTTCAACTTTTGGAAGA
CCTTGAGTTATATCACCAGATCTTGATTTTTCATATATAAAAGTAACTAATGTATCTCCCTCGTAAAGGATTTCTCCATAATGACCATGAACGGTTGCTC
CGCTGGTAGCCAAATGGTACTTAGCTAATCTTATTACTAAAGAGTCAACATGAACAATTATAATTTGACCAGATTTTACGCATGGTCCGTCTTTGGATAT
ACATATATTTTCACAAAGAAACTGTCCAAGGCTAATTATTGTTGATGTATCTTCCCAATAATCGTGATGGAGAAAGCACCAATTCAAATTGAATGGAGTC
AAAATGATGTTACTGCATGGATCAAGATTATAAATCCTTCTATTTTCATCCATGAAATAAGATTTAGGTACTAGGAAAGTCTCTCTTGAATTGTCAGGTA
GTAAATATTTATTTAACAAGATCTCATTATGAGTTATTGAATGATAAGATGAGGAAAAATTCAAAATGCTAGGTACAGTCCCTAACGGACCCAACGGCTT
TACCTAATTGGTTACTTCCAATTACGTAAATCAATGGTTCAAACCGCACTCAAAGGTAGGGCATTTCCCATTGATATAGGAACTTCTATACCAGAAACAA
TGGTATCTCCAATTATAGCCCCTCTGGGATGTAAAATATATCTCTTCTCACCATCCCCATAGTGTATGAGACAAATGTATGCATTTCGATTAGGGTCGTA
TTCTATGGTTACGATTCTATCAGATATGTCTTTTTCATTCCGTCGAAAATCGATTTTACGGTATAGACGCTTATGACCCCCCCCCCTCTATGCCATGCGG
TAATGATTCCTCTAGCATTACGACCTTTACCACAACGATGCTGTTCATAGATCAAATTCTTTCGTGGATTAGATTTCACTTGACTGTCTACGGCTCCATT
GCGTGTGCTCGGGGTAGAAGTTTTGTATAAATGTATCGCCGTGTTATTAAGTATTTTGATTTAAGTCCTTTTCTCTATAAGAGGTGGAATAGAATAACCC
GGTTGAAGCGTAATGATCATACGTCTGTAATGCATTCTATGTCCCATAAGAGGTCCCATTCTTCTACCCTTTCCCGGGACCGGGAGTCAATGACTATTCA
TAGCTATTACCTTGACACCAAAGAAGAGTTCGATCCAATGCTTTATTTCTGCCCTAGTTGATCTTGATTCGACATTAGAAGTATATTGATTAAAGCAAAC
AAAAAGGAAAAACCCTAAAAAGTATTTTTCCTAAGATCCCCATTTGTCCCATTCATGTCATAATTTGAATAACAATTGTTATCTGTTTGCGACATGCGAC
AAAAAAGAACTTACTTCTACTTCCATGTATATGTAACCATTAACCGTTCTCATTTCATTTGGTTTCCTTCTATTCAATCAACGATTGATCGAAAATTGTA
ATTAATTGCAATCGGATCCATTGAATTTTGATGTGTGACGATTCAAGCTGATGGATCTGTCCGTTTGTATCCGTGTGTTGATAAAGAAAAGGAGGAGTTT
ACGAATACAAATAAGATTCAAAGTGGGTTAGGAATGATTCGAGGATACGATCCAATTCTATAAAATCCAATCTATTCTATATAAGAATAAGACTTAGATG
CGGATGGTTTACATTATGGAAGAGACACATGTGTATGTGATATTAGATACTCATTAGTCATTAGTTATATATGGACTATCCGTTATGGACTATCCATATA
GTGTAATTTTCTATTTCCCACTTCCCAATGAGATTATTCAGGAATACACATTGAATGCTGAGATTACGCATTGAATTTCTGGTAGTAGATCTATAAGAAA
AAAAGTGTTTGTGATTGTTCCAGAAGAAATGAAACAAAAGATAGGGTAGAACTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAGATGCAGAGGCGT
ATAATAGATCGATATGAGCATCATGAACTGTCCCATAATAAAACCAGTTGTTGTTGATACCTCCTTCTCGGTTCCTTCTTCCATAACCCGAGCTCGGAGA
AGGAAGAGATAAGAGGGCCCTATAGAGAATGTGGTAATAAATCCATAATAGAGTCCGACCACAACGACCGAATTTATTATCTTCATGCATAAGGATAATA
GATTACCTAGTAGAAAAGATTTCAAAATCATCAGAAACCCCCTTTCTTTTTTTTCTGTTGCACTTTCTCGATTATTATATGATGATTTCTTAACTTTCCA
TATATAGAAAGAAATAGAAATATCTAGAAATGACATCTCTTATGTCAATGACACCAAAGGGATATTCAATGAATGGAATTGGGATATGGATGGAATATAA
TGAAATAGAGCCACTTTGAGGTTCCTTATGAAAT