« Back to Nicotiana attenuata search


Detailed information on CNT30505842


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7FNR4|RK23_ATRBE, E-value = 2e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700759Nicotiana attenuataQuercus lobata36.7348.4688.1126reverse complement
CNT30501657Nicotiana attenuataCoffea canephora69.394.8497.48238forward
CNT30618789Nicotiana attenuataSesamum indicum92.1357.4597.47316forward
CNT30199079Nicotiana attenuataPisum sativum22.457.3493.5177forward
CNT30487455Nicotiana attenuataOlea europaea27.413.7187.2394reverse complement
CNT3093954Nicotiana attenuataSolanum tuberosum75.5115.8296.53259forward
CNT30177809Nicotiana attenuataSecale cereale79.0135.791.14271forward
CNT30291378Nicotiana attenuataTriticum aestivum74.3427.9690.59255forward
CNT30225530Nicotiana attenuataHordeum vulgare74.3436.1789.02255forward
CNT3077259Nicotiana attenuataBrassica juncea25.669.8898.8688forward
CNT30265789Nicotiana attenuataBrassica rapa79.0133.4691.14271forward
CNT3018021Nicotiana attenuataZea mays74.346.5791.37255forward
CNT30360476Nicotiana attenuataLactuca sativa10038.3295.04343forward
CNT30149435Nicotiana attenuataBrachypodium distachyon62.3972.392.06214forward

Expression of CNT30505842

Peptides detected in this lncRNA

>peptide 1 (63 aa)
SSFLSKRWNRITRLKRNDHTSVMHCMSHNRSHSSTLSRKSMTIHSYYLDTKEEFDPMLYFCPS*

Sequence

>CNT30505842
AGTTCTTTTCTTTCTAAGAGGTGGAATAGAATAACCCGGTTGAAGCGTAATGATCATACGTCTGTAATGCATTGTATGTCCCATAATAGGTCCCATTCTT
CTACTCTTTCCCGGAAGTCGATGACTATTCATAGCTATTACCTTGACACCAAAGAAGAGTTCGACCCAATGCTTTATTTCTGTCCTAGTTGATCCTGATT
CGACATTAGAAGTATATTGATTTTTTCCCAATAACCGAATACTTTTGTCTGTAAATACTGCATATTTGATTCCATCCATAAATCGATTTTCTTCCCTATG
AGTTATAGTCTCAATAAGAATGCTAGTTCTTACTGTTCATATA