« Back to Quercus lobata search


Detailed information on CNT30700759


BLAST search results

BLAST vs Swiss-Prot:
sp|Q332R6|RK23_LACSA, E-value = 1e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30501657Quercus lobataCoffea canephora48.462.5688.1126reverse complement
CNT30618789Quercus lobataSesamum indicum48.4622.9186.51126reverse complement
CNT30505842Quercus lobataNicotiana attenuata48.4636.7388.1126reverse complement
CNT3093954Quercus lobataSolanum tuberosum406.3588.46104reverse complement
CNT30177809Quercus lobataSecale cereale33.0811.3384.8886reverse complement
CNT30291378Quercus lobataTriticum aestivum33.089.4384.8886reverse complement
CNT30225530Quercus lobataHordeum vulgare33.0812.283.7286reverse complement
CNT30265789Quercus lobataBrassica rapa33.0810.6284.8886reverse complement
CNT3018021Quercus lobataZea mays33.082.2284.8886reverse complement
CNT30360476Quercus lobataLactuca sativa48.4614.0887.3126reverse complement

Expression of CNT30700759

Peptides detected in this lncRNA

>peptide 1 (37 aa)
LVISLSNGANYKGCFSTPMKFKRPWKQSNCIPATLFH*

Sequence

>CNT30700759
CTTGTAATTTCATTGAGTAATGGAGCTAATTATAAAGGCTGCTTTTCAACGCCAATGAAATTCAAAAGACCGTGGAAGCAATCGAACTGTATACCAGCCA
CATTATTCCACTAACATATTCAGTTATTGGGTAAAAATTAATATACTTCTAATGTCGAATTGGGATCAACTAGGACAGAAACAAATTATTGGGTTCAACT
CTTCTTTGGCGTCGAGGTAATAGCTATATATAGTTATCGACTCCGGTATGTTTTTTTTTT