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Detailed information on CNT3018021


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L389|YCF4_SACHY, E-value = 1e-98

BLAST vs NONCODE:
NONORUT000578, E-value = 6e-103

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678415Zea maysSetaria viridis23.5585.7497.48914forward
CNT30700759Zea maysQuercus lobata2.2233.0884.8886reverse complement
CNT30618789Zea maysSesamum indicum6.3644.9190.28247forward
CNT30201082Zea maysPisum sativum4.1527.2983.23161forward
CNT30505842Zea maysNicotiana attenuata6.5774.3491.37255forward
CNT3047368Zea maysPrunus dulcis4.1221.7182.5160forward
CNT30291378Zea maysTriticum aestivum6.728.5196.54260forward
CNT30225530Zea maysHordeum vulgare6.736.8895260forward
CNT30556029Zea maysOryza glaberrima4.7778.0693.51185forward
CNT30145435Zea maysMedicago truncatula5.3357.1886.96207forward
CNT30265789Zea maysBrassica rapa6.732.196.92260forward
CNT30610466Zea maysGossypium raimondii6.4230.3380.72249forward
CNT30227829Zea maysAnanas comosus3.0124.8988.03117forward
CNT30622174Zea maysCajanus cajan3.8920.7486.09151forward
CNT30596588Zea maysOryza meridionalis3.5659.4894.93138forward
CNT30360476Zea maysLactuca sativa6.5728.4987.84255forward
CNT30369217Zea maysOryza glumipatula7.0642.3589.05274forward
CNT30323690Zea maysAsparagus officinalis14.4621.9987.34561forward
CNT30149435Zea maysBrachypodium distachyon5.6473.9997.26219forward
CNT30100754Zea maysOryza rufipogon18.7355.9292.16727forward
CNT30726954Zea maysLupinus angustifolius14.6121.3584.48567forward

Expression of CNT3018021

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MGYAFEIDVRVITYIMIDTEIDRIICSFNQEKVFLFSMSNRGSRNFYNKLDR*

>peptide 2 (53 aa)
MPYISLGQNKFEAIFLLSSFVPSFTLDKYSKIPLQLQKIAIGTQNTSIGTRKK*

>peptide 3 (54 aa)
MEVQISYSYQDNWKPQPLRILMNLEKEYRPRKNYLFFENLLEVLSICVLIANSY*

>peptide 4 (41 aa)
MNGIDNKKIAKKGNSKGELIKIKYFIFLFPFSSPFYPSNRT*

>peptide 5 (45 aa)
MHAFMLVAYICIHRRFSFVCRKSYIPYHIIVLTQKNICIMILEIH*

>peptide 6 (45 aa)
MTTSEGDRRFKQKKTQNFKHVSRITGKLQTKIVKISSLGAHPRLL*

>peptide 7 (42 aa)
MEMILIIYFGQLYYFLVYSYRKFLYMCLRFLFYHFVQEKKFL*

>peptide 8 (31 aa)
QLHIIRNSKNCFKYSIRKHCLGNFNIHRLIS*

>peptide 9 (30 aa)
SAAYHKEFEELLQIQYQEALLGELQYPQAY*

>peptide 10 (37 aa)
MRRFIPGNPQRKMHTIPSFLSNRSITLPTFHKIVHHK*

>peptide 11 (37 aa)
MAIHSYYLNTKEEFDPMLYFCLSESRFDIKSILILSQ*

Sequence

>CNT3018021
TTCAGCTGCATATCATAAGGAATTCGAAGAACTGCTTCAAATACAGTATCAGGAAGCACTGCTTGGGGAACTTCAATATCCACAGGCTTATTAGCTAAAT
GGCAATTGGCACATACAATTCGTCCAGTTGCTTCCCGCGGGTTTTCATAACCCTGCTGCGCAAAAATGGGATATGCGTTTGAAATAGATGTGCGAGTTAT
TACGTATATCATGATCGATACAGAAATCGATCGAATCATCTGTTCCTTTAACCAAGAAAAAGTTTTTCTATTTTCCATGTCCAATCGCGGATCCCGGAAT
TTCTACAATAAATTAGATAGGTAGCTAAGCTAATCTAGTTCCCTATACACGAGTCTGTTGTCATTCTACTGCAATAGTTGTACTAGAATGATGAATACCT
TGAGCAGGTAGAAATAGAAAGAATTTTGTTAAAAGGAAAAGGGCTTTCTTTCTATTTCTAAAGGAAGAAAGAAATATGCTAATTTGATTAATATTAGGAA
ATGAAATGAGTGAGTTTATGCTTCACTAATTGAATGATAAATGACTACAAGTGAAGGAGATAGACGGTTTAAACAAAAAAAGACCCAAAATTTCAAACAC
GTGTCTAGAATCACAGGAAAACTACAAACAAAAATAGTGAAAATTAGCTCGTTAGGAGCCCATCCAAGATTGTTGTAGACCCAACGAATTAGTAGTTCCC
AACCGCGGGTAGAGTGAAATCAACAAAAAAATCAGTAACTAAAAGAATAAAAAAAGCTTTTATTGAATCATTTAAGTTATAGAAAAATTCCTGAACCCAA
GAATTCAAATGACAAGTTCTTCTTTACCCAGAAAAAAAGAACCACTTAGAATAGCCAAACAGATTATATTTGTTGAGAAATGCAAATGATATGGAGATGA
TCCTCATTATCTATTTTGGCCAATTGTATTATTTCCTTGTGTATTCCTATAGGAAGTTTTTGTACATGTGTCTTCGGTTTCTCTTTTATCATTTCGTCCA
AGAGAAAAAGTTCCTCTAATTCTATGAATCCTTCTAGAATCCTTTTCTCTTGAATATCAGTTAAGAAAGTTTCGGATTGCCTGGTATTCCACCAATTCTT
AATCCAAAGTTCCAGACATTTGTTAAAAGAGAAAGAGACTCCCCAGGGCAAAAGTACGATAAATACAAGATATAAGAAAGAAGGCAATGCTTTCTTTTTT
TTCATTTTTGATCTGTAAGCTGAATATATATGATATTTCTTTTCTTTGAAGCAAAAATTCTATAACAAGGTTTGAGACCTTGTGTTTGTATCTATTTCTC
TTTTTGTATACTAGTGGAATTTCATTGTATTGGGTTCTTTCTTAGATTCTAAATGGAGTGGAATAGAGAAATAAAAAAGGCCTTTCGTATAAAAATGGAA
GAATAGTATGCCATATATCTCACTTGGACAAAACAAATTCGAAGCAATTTTTCTCTTATCCTCGTTTGTTCCTTCCTTTACTTTAGATAAATACTCGAAA
ATCCCCTTACAATTGCAAAAAATTGCAATTGGTACTCAAAATACTTCAATTGGTACACGCAAGAAATAGGCCAATTCGGCAGCTTTTTGTTCAATTTCTC
GTGGAGTAAAAAACTTCTCATCAGTACGAGTCAAGGGAATGACCCCCCTGGCCCCGGATTTCCATATAAAGGATACGACGAGGATAAAGACCCTCTTTAA
CCTGAATTCTAATTGATTGGATATCCCGCACAAGGAATTGAAGGAAGATGCGACGTTTTATTCCAGGGAATCCCCAACGAAAAATGCACACTATTCCCTC
TTTTCTATCGAATCGGTCCATAACACTGCCTACATTCCATAAAATAGTGCACCACAAATAGGAGCTAATGAATAGGCCCGCGATTCCGTAGAAAGACATC
ACGACCCCCTGTGGAAAAAAAAGAATTTGTTGAGATGGAAGTACAGATATCATATTCTTACCAAGATAACTGGAAGCCCCAACCGCTAAGAATCCTAATG
AACCTAGAAAAAGAATACAGGCCCAGAAAAAATTACCTCTTTTTCGAGAACCTTTTAGAAGTTCTATCCATATGTGTTCTGATCGCCAATTCATATTAGA
TATACTAAATCCAGTAGCGGTCAATTGAAATTGAGAGAATAAGCTAAATGATTTTTACTTTACTTTTTTTGATTCTGAAATAGCCTTCAGTAGCTAGTAC
TCCTGTGAAATAATTGGTTAGATACATTGACTTTCTATTCAAAAAAAATTAGTGGATCCACTTAAAAAAAAAAACTCGCTATAGTCGGCTACGCATATGC
ATGCATTTATGCTCGTAGCTTATATCTGCATCCATAGACGTTTTTCATTTGTGTGTAGAAAGAGCTACATACCCTATCATATTATAGTACTTACACAAAA
AAATATCTGTATTATGATCCTGGAAATACATTGAGAAAATTTGGCCCCGTCGTTTCTAGACAATCTTATTTTCTGCACATAAAGAAATAAGGAAGTCATT
GCAATTGCCGGAAATACTAAGCCTACTAAGGTACGAAAATAGAGGGTAAGTTAAAATCTGTCATAGAATATGTGTCTCAATTCAAATTTACTATTTCTAT
CTATTCGAAATATATCTTAAGATTCTTATGATATAATTAAGTATATCTATTATAAGGAATATTGACTATTGTATTTTTTAGTTTACAAAATAAAGATTTT
TTATAGATATAGAATAAAAAAGTATTCTATAAAATAAATGAATGGAATTGATAATAAGAAAATTGCAAAAAAGGGGAACTCAAAAGGGGAACTCATTAAA
ATAAAATATTTTATTTTTCTTTTCCCATTCTCATCGCCTTTCTATCCTTCTAATCGAACTTGAAATTGGATTCAAAAGAAAGCTATTGTGAAAATAAAAG
AAATACCTCTTTCAGAATACCCTTTAATTTAAAAAGTAGAAGTGGAATAGAATACCCAGTTGAAGGGTAATGATCATACGTCTGTAATGCATTGTATGTC
CCAGAATAGGTCCCATTCTTCTACCCTTTCCGGGTAGTCGATGGCTATTCACAGCTACTACCTTAACACCAAAGAAGAGTTCGACCCAATGCTTTATTTC
TGTCTTAGTGAATCCCGATTCGACATTAAAAGTATATTGATTCTTTCCCAATAAACGAAGACTCTTTTCTGTAAATACTGCGTATTTGATTCCATATCGT
ACGATAATACTATATTTTGATTTATATTTGTTTATTGTATTATACCTTTCTATATTCTAGATATATAGAATAGAAGAATCTCGATTTGTCAAGTCTCATG
ATCGTATCAAGATCTATTTCAATTCGGCTCAGTCTTTTTTTTTTTAGAAAAGATTGAGCCGAATTGAATTGCAATCAATTAGAGGAATAAAGAAGAATTA
CTGCATTTCTTAACTTATTTTTTCTCTTTCTATTTTGCTTTTTTTTTTATTTTATATGGTATCCATCGCTTTGAAAACCATCAAATTTGATCTCCTTCCA
TATTTCACAAGCTGCGGCTAAGTTCAGCACTCCATTTGCAAGCTGCTTTGATAATTTCATTACCTTCACGAGCAAGATCGCGCCCTTCGTTACGAGCTTG
TACACAGGCTTCTAAAGCCACACGATTAGCTGCTGCACCAGTCCTGAGTGAAAAAGATACCGCGAGAACGATCTTTTTCAATAAAATCATCGCGCAATAA
ATCAACAAAACCTAAAGTTATTTCGCGTTCCCCTTCTAACTTACCTACTACTGTACCGGAGTGGATATGATCTCCCCCCGACATACGCAATGCTTTAGCT
AATACACGGAAATGCATACCATGATTTTTCTGTCTATCAATAACTGCATGCATTGCTCGGTGAATGTGAAGAAGTAGGCCG