Detailed information on CNT30225530


BLAST search results

BLAST vs Swiss-Prot:
sp|P69668|RK23_HORVU, E-value = 9e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700759Hordeum vulgareQuercus lobata12.233.0883.7286reverse complement
CNT30618789Hordeum vulgareSesamum indicum35.0444.9187.85247forward
CNT30505842Hordeum vulgareNicotiana attenuata36.1774.3489.02255forward
CNT3093954Hordeum vulgareSolanum tuberosum33.914.686.19239forward
CNT30177809Hordeum vulgareSecale cereale37.8735.1897.75267forward
CNT30291378Hordeum vulgareTriticum aestivum46.2435.7597.85326forward
CNT30265789Hordeum vulgareBrassica rapa37.8732.9697.75267forward
CNT3018021Hordeum vulgareZea mays36.886.795260forward
CNT30360476Hordeum vulgareLactuca sativa36.1728.4985.49255forward
CNT3054389Hordeum vulgareAmborella trichopoda29.58.5584.13208forward
CNT30149435Hordeum vulgareBrachypodium distachyon32.0676.3594.69226forward
CNT30103728Hordeum vulgareOryza rufipogon27.816.991.33196forward

Expression of CNT30225530

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MAIHSYHLNPKKSLNQCFISVLVNPDSTLKVY*

Sequence

>CNT30225530
TTTTTATTAAGGTTATAGAAAACTTCCTTATCTAGTTCTAGCATGTTGACTCACGATTACGCCTGTTAAAAGTTTCAAACGTCCTCTTTTTTGAAATTGA
AAGAGAGTCTTATAAAAAGGTCTAACTTCCAAACTATGTCTTTTTTCATTCATTCTCCTTTAGTTTTTTTCTCTATCTAGAAGTGGAATAGAATAACCCG
GTTGAAGGGTAATGATCATACGTCTGTAATGCATTGTACGACCCAGAATAGGTCCTATTCTTCTACCTTTTCCAGGTAGTCGATGGCTATTCACAGCTAC
CACCTTAATCCAAAGAAGAGTTTGAACCAATGCTTTATTTCTGTCTTAGTGAATCCCGATTCGACATTAAAAGTATATTGATTCTTTCCCAATAAACGAA
GACTTTTTTCTGTAAATACTGCGTATTTGATTCCATTATCATATGATACTACTATATTTTATTATTTTCTTTTTATTTCTTTATTGTATTATACCTTAAT
ATATATATATATTCTAGATATATAGAATAGACGAATCTCGATTTGTCAAGTCTCGTGATCATATCATGATCTATTTTTATTTGGCTCAATCTTTTTTTTA
TAAAAAAGATTGAGCCGAATTTAATTGCAATCAATTAGAAGAATAAAGAAGAATTACTGCATTTCATAACTTATTTTTTTCTCCTTTTATTTCGGTTATT
TTTTT