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Detailed information on CNT30265789


BLAST search results

BLAST vs Swiss-Prot:
sp|P69668|RK23_HORVU, E-value = 4e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697733Brassica rapaOryza sativa12.7227.3299.03103reverse complement
CNT30700759Brassica rapaQuercus lobata10.6233.0884.8886reverse complement
CNT30501657Brassica rapaCoffea canephora20.863.4491.72169forward
CNT30618789Brassica rapaSesamum indicum32.594889.77264forward
CNT30199079Brassica rapaPisum sativum47.936.9989.69388forward
CNT30505842Brassica rapaNicotiana attenuata33.4679.0191.14271forward
CNT3093954Brassica rapaSolanum tuberosum82.8440.9988.38671forward
CNT30177809Brassica rapaSecale cereale87.7893.6897.61711forward
CNT30291378Brassica rapaTriticum aestivum32.9629.2899.63267forward
CNT30225530Brassica rapaHordeum vulgare32.9637.8797.75267forward
CNT30511784Brassica rapaSolanum lycopersicum16.4220.2493.23133forward
CNT30314546Brassica rapaCamelina sativa34.3230.9996.76278forward
CNT3077259Brassica rapaBrassica juncea61.7356.1294500forward
CNT3018021Brassica rapaZea mays32.16.796.92260forward
CNT30609661Brassica rapaGossypium raimondii40.3719.0293.58327forward
CNT30229782Brassica rapaAnanas comosus27.2898.2295.48221forward
CNT30717682Brassica rapaMalus domestica golden8.0227.6690.7765reverse complement
CNT30360476Brassica rapaLactuca sativa86.1777.9989.97698forward
CNT3054389Brassica rapaAmborella trichopoda79.2626.3889.25642forward
CNT30149435Brassica rapaBrachypodium distachyon34.6994.9397.51281forward

Expression of CNT30265789

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MAIHSYHLNTKEEFDPMLYFCLSESRFDIKSILILSQ*

>peptide 2 (40 aa)
SFATAPAALANCPPLPRVISMLCMAVPKGISVEVGHFPLI*

>peptide 3 (36 aa)
MRQMYAFRLGSYSMVTILPYMSFVFRRKSILRYRRL*

>peptide 4 (64 aa)
MTSPSMPYGNDSSGITTFTTMMLPIDQIISWIGFHLTVYGSIPLRVLGIGVLYKCFAVLLSILL*

Sequence

>CNT30265789
AGTTTCGCTACAGCACCTGCTGCTCTAGCTAATTGCCCACCCCTTCCACGTGTGATTTCTATGTTATGCATGGCCGTGCCTAAGGGCATATCGGTTGAAG
TAGGGCATTTCCCATTGATATAGGAACTTTTGTACCAGAAACAATAGTATCTCCAATTATAGCCCCTCTGGGATGTAAAATATATCTCTTCTCACCATCC
CCATAGTGTATGAGACAAATGTATGCATTTCGATTAGGGTCGTATTCTATGGTTACGATTCTACCATATATGTCTTTTGTATTTCGTCGAAAATCTATTT
TACGGTATAGGCGCTTATGACCTCCCCCTCTATGCCTTACGGTAATGATTCCTCTGGCATTACGACCTTTACCACAATGATGCTGCCCATAGATCAAATT
ATTTCGTGGATTGGATTTCACTTGACTGTCTACGGCTCCATTCCCTTGCGTGTGCTCGGGATAGGTGTTTTGTATAAATGTTTCGCCGTATTATTAAGTA
TTCTCCTTTAGTTTTTTTCTCTATCTAGAAGTGGAATAGAATAACCCGGTTGAAGGGTAATGATCATACGTCTGTAATGCATTGTATGGCCCAGAATAGG
TCCTATTCTTCTACCTTTTCCAGGTAGTCGATGGCTATTCACAGCTACCACCTTAACACCAAAGAAGAGTTCGACCCAATGCTTTATTTCTGTCTTAGTG
AATCCCGATTCGACATTAAAAGTATATTGATTCTTTCCCAATAAACGAAGACTTTTTTCTGTAAATACTGCGTATTTGATTCCATCCATAAATCGACTTT
CCCTCCTATG