Detailed information on CNT30618789


BLAST search results

BLAST vs Swiss-Prot:
sp|Q4VZK6|RK23_CUCSA, E-value = 7e-60

BLAST vs NONCODE:
NONBRAT006199, E-value = 7e-83

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549133Sesamum indicumIpomoea triloba16.3628.1295.5690forward
CNT30700759Sesamum indicumQuercus lobata22.9148.4686.51126reverse complement
CNT30501657Sesamum indicumCoffea canephora65.647.3496.68361forward
CNT30402103Sesamum indicumBeta vulgaris36.3640.1695.5200forward
CNT30198019Sesamum indicumPisum sativum13.2722.697.2673forward
CNT30505842Sesamum indicumNicotiana attenuata57.4592.1397.47316forward
CNT3093954Sesamum indicumSolanum tuberosum43.8214.7296.27241forward
CNT30177809Sesamum indicumSecale cereale4834.7889.77264forward
CNT30291378Sesamum indicumTriticum aestivum44.9127.0889.47247forward
CNT30225530Sesamum indicumHordeum vulgare44.9135.0487.85247forward
CNT30265789Sesamum indicumBrassica rapa4832.5989.77264forward
CNT3018021Sesamum indicumZea mays44.916.3690.28247forward
CNT30360476Sesamum indicumLactuca sativa60.9137.4393.13335forward
CNT3054389Sesamum indicumAmborella trichopoda38.188.6393.33210forward
CNT30149435Sesamum indicumBrachypodium distachyon36.7368.2492.57202forward

Expression of CNT30618789

Peptides detected in this lncRNA

>peptide 1 (56 aa)
LSNTRWNRITRLKRNDHTSVMHCMSHNRSHSSTLSRKSMTIHSYYLDTKEEFDPML*

Sequence

>CNT30618789
TCTTTCTAATACAAGGTGGAATAGAATAACCCGGTTGAAGCGTAATGATCATACGTCTGTAATGCATTGTATGTCCCATAATAGGTCCCATTCTTCTACC
CTTTCCCGGAAGTCGATGACTATTCATAGCTATTACCTTGACACCAAAGAAGAGTTCGACCCAATGCTTTAGTTCTGTCCTAGTTGATCCTGATTCGACA
TTAGAAGTATATTGATTTCTCCCCAATAACCGAATACTTTTGTCTGTAAATACTGCATATTTAATGCCATCCATAAATCTATTTTCTTCCCTATGAGTTC
TAGTCTCAATAAGAATGCTAGTTCTTACTATTTACATATTATGATATGAATATACCACACCAATTCGTTATGTATGGATGATGAGATTCCATTGATACAG
AACCAATTCCAATAGACTTATTGGAGGGTCCCATTGCGTGCATCCAGTAGGAATTGAACCTACGAATTCGCCAATTATGAGTTGGGCGCTTTAACCATTC
AGCCATGGATGCTTAGCAGGGATCCTCGTACATGGTGAATAACCAAATTC