Detailed information on CNT30251696


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 2e-150

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695986Avena sativaOryza sativa41.3538.5791.41361forward
CNT30671434Avena sativaSetaria viridis34.9439.6194.1305forward
CNT30187050Avena sativaSecale cereale68.0465.3589.39594forward
CNT30589400Avena sativaMusa acuminata42.554.2488.14371forward
CNT30664789Avena sativaTriticum dicoccoides62.8960.891.8549forward
CNT30129910Avena sativaCorymbia citriodora36.4350.4890.25318forward
CNT30685649Avena sativaTriticum urartu62.8958.4791.8549forward
CNT30582317Avena sativaEchinochloa crusgalli58.4257.9591.57510forward
CNT30556832Avena sativaPanicum hallii39.0659.5195.01341forward

Expression of CNT30251696

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MAWTKNPNMENMARRPFLSSLTLSSAKASGSSARPRGSKLPPG*

>peptide 2 (29 aa)
MAQREWMTSSSRFLAKVSGSAERPAVSQP*

>peptide 3 (35 aa)
MVMRPSPKGEALEAFTGVPAIAGEESAMVEAAIAR*

Sequence

>CNT30251696
CACACATGCAGCAGCAGCAGCATTCAGCAATGAAGTGGTCGGCCAAGCGCGCGCACGACGCAGCACACGCTAGAGGTTGAGCTTACTAATAAGCTCTTAC
TTGCCGGGGACGAAGTTGGTGGCGAAGGCCCATGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGA
TGGCCTGGACGAAGAATCCGAACATGGAGAACATGGCGAGGCGTCCGTTCTTGAGCTCCTTGACCTTGAGCTCGGCGAAGGCCTCCGGGTCGTCGGCGAG
GCCGAGGGGGTCGAAGCTGCCTCCGGGGTAGAGCGGGTCGACGATCTCACCGAGCGGTCCACCGGCGACGCGGTAGCCCTCGACGGCGCCCATGAGCACG
ACCTGGCAGGCCCAGATGGCGAGGATGCTCTGGGCGTGCACGAGGCTGGGGTTGCCGAGGTAGTCGAGGGCGCCGAGCATGGCCCAGCGGGAGTGGATGA
CCTCGAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGAGAGGCCGGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTGGG
GGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCAGGGGCTGCCGGACGCGGACACCTTGGGCTTGGCGGCCGTCTTGCGCATG
GTGATGCGGCCCTCGCCGAAGGGGGAGGCCCTGGAGGCCTTCACGGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTGGAGGCTGCCATTGCTC
GCTAGTCTGAGGTGAGGTGCTTCGAGTGAGCTCTCAGGTAGTAGTAGTAGATGGTGGTGTGTGTTGGTGCTGT