CANTATAdb - search

Detailed information on CNT30187050

BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 2e-115

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30251696	Secale cereale	Avena sativa	65.35	68.04	89.39	594	forward
CNT30664789	Secale cereale	Triticum dicoccoides	68.65	69.1	95.35	624	forward
CNT30685649	Secale cereale	Triticum urartu	68.87	66.67	95.37	626	forward
CNT30369221	Secale cereale	Oryza glumipatula	35.31	47.91	88.47	321	forward
CNT30582317	Secale cereale	Echinochloa crusgalli	56.11	57.95	87.25	510	forward
CNT30117588	Secale cereale	Oryza nivara	48.29	36.37	89.98	439	forward

Expression of CNT30187050

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCGLASFLASGELRLTVGGAGGR

>peptide 2 (52 aa)
MSTTWQAQMARMLCACTRLGLPSMAQRQWITSSSRFLAKVSGSADSPAVSQP*

>peptide 3 (35 aa)
MENMARRPFLISFTLSSANASGSSARPRGSKLPPG*

Sequence

>CNT30187050
TTAAGCAGAAGAACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACATAAACACCATCTTTTAGTGTACACACACCAACTCATCATCTCGA
CTCGCCCTCACATGCAACATCTATCAGTCCGGACTCAGTCTCAAAACGGAAAGACATGCAGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCATGCCC
GCGCGTGCACGCACGCGCTAGAGCTAGAGAGCTGACCGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGAACCCGAACATGGAGAACATGGCGAGGC
GGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCCTCGGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCCAC
GATCTCGCCCAGCGGGCCGCCGGCCACGCGGTAGCCCTCCACGGCGCCCATGAGCACCACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGCACG
AGGCTGGGGTTGCCGAGCATGGCCCAGCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGACAGCCCCGCGGTGTCCC
AGCCGTAGTCCCCGGGGAACTCGCCGGTGAGGTAGCTCGGCGGGTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCT
GGAGGCGGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCGGCCATC
GCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATTGCGCGCTGCGGACTCGCTAGCTTTCTTGCTTCGGGTGAGCTGAGGCTGACTGTAGGAGGCGCTG
GTGGTCGTT