CANTATAdb - search

Detailed information on CNT30685649

BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 7e-122

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30187050	Triticum urartu	Secale cereale	66.67	68.87	95.37	626	forward
CNT30251696	Triticum urartu	Avena sativa	58.47	62.89	91.8	549	forward
CNT30664789	Triticum urartu	Triticum dicoccoides	97.76	101.66	97.6	918	forward
CNT30369221	Triticum urartu	Oryza glumipatula	42.07	58.96	88.86	395	forward
CNT30582317	Triticum urartu	Echinochloa crusgalli	51.86	55.34	89.53	487	forward
CNT30117588	Triticum urartu	Oryza nivara	51.76	40.27	89.71	486	forward

Expression of CNT30685649

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MQHLSVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 2 (55 aa)
MSTTWQAQMARMLCACTRLGLPSAPSMAQRQWMTSSSRFLAKVSGSADSPAVSQP*

>peptide 3 (44 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLAGFCFG*

Sequence

>CNT30685649
TTAAGCAGAAGAACAGAGATGCCTTGATTGATCTGAAAAATAACCAGATACATTACACAAACACCATCTTGTAGTGTACACACACCAACTCCTCATCTCG
ACTCGCCCTCACATGCAACATCTATCAGTCCGGACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAG
CCATGAAGTTGTCGGCCTAGAGCTTGAGCTGACTGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGA
GGTGGTCGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAAGGCCTCGGGGTCCTCGGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGG
GTAGAGCGGGTCCACGATCTCGCCGAGCGGGCCGCCGGCGACGCGGTAGCCCTCCACGGCGCCCATGAGCACCACCTGGCAGGCCCAGATGGCGAGGATG
CTCTGCGCGTGCACCAGGCTGGGGTTGCCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATGACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGT
CGGCGGACAGCCCCGCGGTGTCCCAGCCGTAGTCACCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGGTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCG
GTCGGAGCCGTACCACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGCGCCGCCCTGGAG
GCCTTCACCGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATCGCGCGCTGCGTGCTAGCTGGCTTTTGCTTCGGGTGAGCTG
AGGCTGGCAGTGGGAGGCGCTGGTGGTCGTTGGTGCTGT