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Detailed information on CNT30671434

BLAST search results

BLAST vs Swiss-Prot:
sp|P07369|CB2G_SOLLC, E-value = 1e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30188325	Setaria viridis	Secale cereale	39.61	35.8	92.13	305	forward
CNT30300806	Setaria viridis	Triticum aestivum	39.61	37.33	92.46	305	forward
CNT30395219	Setaria viridis	Triticum turgidum	41.82	40.25	91.3	322	forward
CNT30589400	Setaria viridis	Musa acuminata	38.18	42.98	88.1	294	forward
CNT30251696	Setaria viridis	Avena sativa	39.61	34.94	94.1	305	forward
CNT30664642	Setaria viridis	Triticum dicoccoides	46.23	49.79	91.57	356	forward
CNT3011673	Setaria viridis	Zea mays	32.6	32.22	96.02	251	forward
CNT30129910	Setaria viridis	Corymbia citriodora	32.86	40.16	91.7	253	forward
CNT30684416	Setaria viridis	Triticum urartu	53.12	47.61	92.42	409	forward
CNT30362617	Setaria viridis	Sorghum bicolor	95.71	87.95	89.69	737	forward
CNT30369213	Setaria viridis	Oryza glumipatula	41.82	40.25	92.86	322	forward
CNT30103258	Setaria viridis	Oryza rufipogon	56.36	41.49	89.86	434	forward

Expression of CNT30671434

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MRQLACSINQSTYAPPGRKTMELQRRMASLVAGDEVGGRPGSRAGPCR*

>peptide 2 (43 aa)
MAWTKNPNMENMARRPFLSSLTLSSAKASGSSARPRGSKLPPG*

>peptide 3 (30 aa)
MVMRPSPKEPTLMGVPAMVEEIAMVEAAIA*

>peptide 4 (89 aa)
MDKAGVAEVARGLAGEGAEVLDAVGAVPRAAGRRHLGLGRGLAHGDAALAEGAHLDGGAGHGGGDRHGGGSHCVRRESVLDQSVAAADG*

>peptide 5 (66 aa)
LTTREQNHYYCTNIILVYNADSSSRLAPEMQRETRHACGSSLAASTNPRTPLPAGRQWSCRGEWRA*

Sequence

>CNT30671434
TTAACCACCAGGGAACAAAACCACTACTATTGCACAAACATCATCTTAGTGTACAACGCCGACTCATCATCTCGACTTGCCCCTGAAATGCAACGTGAAA
CAAGACACGCATGCGGCAGCTCGCTTGCAGCATCAACCAATCCACGTACGCCCCTCCCGGCCGGAAGACAATGGAGTTGCAGAGGCGAATGGCGAGCTTA
GTTGCCGGGGACGAAGTTGGTGGTCGGCCAGGTTCTCGAGCGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAATCCGAACATGGAGAACATGGCGAG
GCGGCCGTTCTTGAGCTCCTTGACCTTGAGCTCGGCGAAGGCCTCAGGGTCGTCGGCCAGGCCGAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCG
ACGACCTCGCCGAGTGGGCCGCCGGCAATGCGGTAGCCCTCGACGGCGCCCATGAGCACGACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCATGGA
TAAGGCTGGGGTTGCCGAGGTAGCTCGGGGGCTCGCCGGAGAAGGGGCCGAGGTACTTGACGCGGTCGGGGCCGTACCACGGGCTGCCGGACGCCGCCAC
CTTGGGCTTGGCCGCGGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGAGCCCACCTTGATGGGGGTGCCGGCCATGGTGGAGGAGATCGCCATGGTG
GAGGCAGCCATTGCGTGAGGCGAGAGAGTGTGCTGGACCAGTCGGTAGCTGCTGCTGATGGGTGAAGGTG