Detailed information on CNT30556832


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 6e-91

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30188325Panicum halliiSecale cereale59.6940.1493.57342forward
CNT30300806Panicum halliiTriticum aestivum59.5141.7493.55341forward
CNT30224245Panicum halliiHordeum vulgare66.3256.8987.89380forward
CNT30394515Panicum halliiTriticum turgidum56.7239.5493.54325forward
CNT30589400Panicum halliiMusa acuminata60.3850.5889.31346forward
CNT30251696Panicum halliiAvena sativa59.5139.0695.01341forward
CNT30664418Panicum halliiTriticum dicoccoides54.2836.5594.53311forward
CNT30129910Panicum halliiCorymbia citriodora50.4445.8792.39289forward
CNT30684416Panicum halliiTriticum urartu49.2132.8394.33282forward
CNT30579967Panicum halliiEchinochloa crusgalli67.1937.7893.51385forward

Expression of CNT30556832

Peptides detected in this lncRNA

>peptide 1 (87 aa)
MQRETRDTHAAACSINESTYAQALLLTGSARWSARFSSGPLPVTMAWTKNPNMENMARRPFLSSFTLSSAKASGSSARPRGSKLPPG*

>peptide 2 (41 aa)
PLKSDKSMINHQGTKIQNHYYCTNIIFHLSVQRQLIISTCP*

Sequence

>CNT30556832
TGCCCTTAAAATCTGACAAATCAATGATTAACCACCAGGGAACAAAAATACAAAATCACTACTATTGCACAAACATCATCTTTCATCTTAGTGTACAACG
CCAACTCATCATCTCGACCTGCCCCTGAAATGCAACGTGAAACAAGAGACACACATGCGGCAGCTTGCAGCATCAATGAATCCACGTACGCCCAGGCGTT
GTTGTTGACCGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGTGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAATCCGAACATGGAGAACATGGCG
AGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGAAGGCCTCGGGGTCGTCGGCCAGGCCGAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGT
CGACGACCTCGCCGAGCGGGCCGCCGGCAATGCGGTAGCCCTCGACGGCGCCCATGAGCACGACCTGGCAGGCCCAGATGGCGAGGATGCTCTGGGCGTG
GATCAGGCTGGGGTTGCCGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACG