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Detailed information on CNT30589400


BLAST search results

BLAST vs Swiss-Prot:
sp|P27518|CB21_GOSHI, E-value = 4e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695986Musa acuminataOryza sativa52.6338.4690.28360forward
CNT30671434Musa acuminataSetaria viridis42.9838.1888.1294forward
CNT30521860Musa acuminataSetaria italica54.0933.0191.89370forward
CNT30188325Musa acuminataSecale cereale53.843.1990.76368forward
CNT30300806Musa acuminataTriticum aestivum54.5345.6590.88373forward
CNT30224983Musa acuminataHordeum vulgare34.538.6992.37236forward
CNT30394515Musa acuminataTriticum turgidum52.0543.3191.29356forward
CNT30441097Musa acuminataAegilops tauschii41.0847.2391.1281forward
CNT30251696Musa acuminataAvena sativa54.2442.588.14371forward
CNT30664418Musa acuminataTriticum dicoccoides5040.1992.4342forward
CNT30685532Musa acuminataTriticum urartu45.7633.3791.05313forward
CNT30721767Musa acuminataTriticum spelta34.531.4294.07236forward
CNT30108138Musa acuminataOryza longistaminata29.3924.8194.53201forward
CNT30578975Musa acuminataEchinochloa crusgalli53.6559.7791.83367forward
CNT30117588Musa acuminataOryza nivara52.6329.8390.28360forward
CNT30556832Musa acuminataPanicum hallii50.5860.3889.31346forward

Expression of CNT30589400

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MGPLPVTMACTKKPNMENMARRPFLISFTLSSANASGSSARPRGSKAPPG*

>peptide 2 (88 aa)
MMARLQPPFMSRYTHHFRGRRPTTTTSMHAGRQREMITCRGRSWWRRPRRCWRRGRRGGRRGSRWGPCRSRWPARRSRTWRTWQGGRS*

Sequence

>CNT30589400
CCTTCGACACTTGCACTAAGTCGACCATTAACTAATAATATCAATATTACAGTACAACACAACACATGATGGCTCGATTGCAGCCTCCCTTCATGTCCCG
TTACACCCACCATTTTAGAGGAAGACGACCGACAACGACGACGTCAATGCACGCGGGAAGGCAGCGGGAGATGATCACTTGCCGGGGACGAAGTTGGTGG
CGTAGGCCCAGGCGTTGTTGGCGACGGGGTCGGCGAGGTGGTCGTAGAGGTTCTCGATGGGGCCCTTGCCGGTCACGATGGCCTGCACGAAGAAGCCGAA
CATGGAGAACATGGCAAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCGTCGGGGTCGTCGGCCAGGCCCAGGGGGTCGAAGGCGCCG
CCGGGGTAGATGGCGTCGAGGCCCTCACCCAGCGGGCCGCCGCCGACGCGGTAGCCCTCCACGAAGCCCATCAGCACCACCTGGCAGGCCCAGATGGCGA
GGATGCTCTGCGCGTGGATCAGGTTGGGGTTGCCCAGGTAGTCGAGGAGCCGACCCTGCGGACGAGCTCGTTCTGCTGCTTCAGAGCGGTCTGGCCGGCG
AAAGCCGATTGCTGGAGCGCGGAGGTAGCCATTGGAGTACCGATGAGGAAGCCTTCCCGGACTGAAGTCGAGTGCTGATGCCGC