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Detailed information on CNT30582317


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 1e-112

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187050Echinochloa crusgalliSecale cereale57.9556.1187.25510forward
CNT30299798Echinochloa crusgalliTriticum aestivum48.0748.4589.36423forward
CNT30393931Echinochloa crusgalliTriticum turgidum47.6148.2291.65419forward
CNT30251696Echinochloa crusgalliAvena sativa57.9558.4291.57510forward
CNT30664789Echinochloa crusgalliTriticum dicoccoides55.3453.9389.53487forward
CNT30685649Echinochloa crusgalliTriticum urartu55.3451.8689.53487forward
CNT30117588Echinochloa crusgalliOryza nivara58.5242.6788.35515forward

Expression of CNT30582317

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQREWMTSSSRFLAKVSGSADSPAVSQP*

>peptide 2 (30 aa)
GKERKRTSWVGRDTIQSDNEHCNSFSVEPS*

>peptide 3 (37 aa)
ERKEKGRAGLDGIQYNQTMNTAIPSRLNPRNLHHGTN*

>peptide 4 (47 aa)
MVTRASPKRDDGTLTALPAKAVEERAMVLVAIALLTPRCLVVYAGVRL

>peptide 5 (88 aa)
MVQTETSARSHPDTLQHIEQFGINASLAGHEVGGVGPGIVVDGVGEVVGKKPNMENMARRPFLSSLTLSSAKASGSSARPSGSKLPPG*

Sequence

>CNT30582317
GGAAAGGAAAGAAAAAGGACGAGCTGGGTTGGACGGGATACAATACAATCAGACAATGAACACTGCAATTCCTTCTCGGTTGAACCCTCGTAATTTACAC
CATGGTACAAACTGAAACCAGTGCGCGCTCACATCCGGACACCCTACAGCATATCGAACAGTTTGGGATCAACGCCTCACTTGCCGGGCACGAAGTTGGT
GGCGTAGGCCCAGGCATTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCATTCTTGAGCTCCTTGA
CCTTGAGCTCAGCGAAGGCCTCTGGGTCGTCTGCCAGGCCGAGCGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCTCCGAGCGGGCCGCC
GGCAATGCGGTAGCCCTCGACGGCGCCCATGAGCACGACCTGGCAGGCCCATATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGATTGCCGAGGTAG
TCAAGCGCGCCGAGCATGGCCCAGCGGGAGTGGATGACCTCCAGCTCACGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGACAGCCCGGCGGTGTCCCAGC
CGTAGTCGCCGGGGAACTCGCCGGTCAGGTAGCTCGGGGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCTGGGCCGTACCACGGGCTGCCGGA
GGCGGCCGGCTTGGGCTTCGCTGCTGTCTTGCGCATGGTCACGCGGGCCTCGCCGAAGAGAGACGATGGCACGTTGACGGCCTTGCCGGCGAAGGCCGTG
GAGGAGAGGGCCATGGTGCTGGTCGCCATTGCGCTGCTAACACCGAGGTGTCTTGTGGTTTATGCAGGGGTGAGACTCGC