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Detailed information on CNT30585671


BLAST search results

BLAST vs Swiss-Prot:
sp|B5LMM3|PETN_CICAR, E-value = 5e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515578Echinochloa crusgalliJuglans regia7.3329.3892.9399reverse complement
CNT30221321Echinochloa crusgalliHordeum vulgare44.1244.2189.09596forward
CNT30257601Echinochloa crusgalliAvena sativa40.8687.4888.95552reverse complement
CNT30343618Echinochloa crusgalliEragrostis tef35.8371.2892.77484forward
CNT30100227Echinochloa crusgalliOryza rufipogon15.9150.8396.74215forward

Expression of CNT30585671

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MFYSSIIEYVLFQYNRIERAIIVIQNFYSTRSGE*

>peptide 2 (29 aa)
MDIVSLAWAALMVVFTFSLSLVVWGRSGL*

Sequence

>CNT30585671
TATTGATCAATAGTAGAAGAATTCCTTCATAAAAATAGGAGACATAATTTACATGGATATAGTAAGTCTCGCTTGGGCTGCTTTAATGGTAGTCTTTACA
TTTTCTCTTTCGCTAGTAGTATGGGGGAGGAGTGGACTCTAGGGATACTACCAATTGATTGAGTAGTCGAATTGTAGTATCAACTCTTTTCTTTAATTGA
TCGTTTTGCATTAATAAGTTTGGCAAACTTTATTTTTTCTCTCCTTCTTTAGTTTTGTTTCACTCTTGTAAAAAACTTTTTTAAGAAAGTAAGAAAGAGT
CGTTCTATTCTACTATGTTCTATTCCAGTATAATAGAATATGTTCTATTCCAGTATAATAGAATAGAAAGGGCTATTATAGTAATTCAGAATTTCTATTC
TACTAGAAGTGGCGAGTAAAAAGAAAGTTCTATACATAAGAAAATTAACCTTTTTTACACGAAGCTATTTACAACATATCGCACATTTTCCATTTATACT
ATTTTCTTATTCTTAGAAAATTTTTGATGTTTTTTTTTTTTTTTTTTTGAAGGATCTCGATTGAAGCATCTCGCGCTATTTTTAAGCATGAAAGATTCGT
AGGTTTTTTCCTTTACTTTTTTTTTCTTTTACTATAGTCTATTCTCGTATTATTTCCCCCCCCTCCATGGATTCTTTCAATGAAGAATTGTCTTCGATTT
TTTTGATTTTGACTTGATGGAAATTAAGTGGATGCAGTGAAAAAAGAAGTTGAATTAGACTACTATTTCAATCTACTAATCGATTCCATGTAGATTCAAG
ATAATATAATAGAAAGAATCTAAAGTGTGGTAGAAAGAACTATATGTAGTTCTTTCTACCACACTTTATGATTCCAACCAGATCCTTTCATTTAAGACTT
GGATTTGTATTTTCTTTAATCCCTTTTTCATTTTCATTTCTTCAATGATTAATTGGAATTCCAATTAATCATTTTGGCTGGCTTTTTTTTACATAAATAA
TAAGTAAAAAGGCAGTAGGAACTAGAATGAACAATGCGGTAGCAATAAATGCGAGAATATTGACTTCCATAACCTCTTGATTTTTTTTTCACAATAACTC
GGGATGTAATCCCATAGAGAGGAAAAAGGGGTATCCTGTAAATTTCAGGGGAGGACTTACATTCTGATAATACTGAATCAATCCAATATTATGAATATTG
GATCTATCAAATCAATTCATGCTTGATAGTAGAATAATATAACATAGGAAGATCCTTTATCCATACTAAGACCAAAATAGGTTTTTTGATTGGGATTCGA
AACTCCCTCTATTCTATTTTTCATTCTTTTCCACTTTTGCTTTTATATATG