CANTATAdb - search

Detailed information on CNT30343618

BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L3A9|PSBM_SACHY, E-value = 6e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30221321	Eragrostis tef	Hordeum vulgare	67.45	33.98	92.79	458	forward
CNT30257601	Eragrostis tef	Avena sativa	61.41	66.09	93.76	417	reverse complement
CNT30585671	Eragrostis tef	Echinochloa crusgalli	70.1	35.23	93.07	476	forward

Expression of CNT30343618

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MNNAVAINARIFTSITSLFSFFHNNSGCNPMERKRGYPVNSRGGLAF*

Sequence

>CNT30343618
TTTTATATTTTTAGATTTTTTTTGTTTTTGAAGGATCTCGCGTGAAGCATCTCGCATCATTTTTAAGTATGAAAGATTCGTAGGTTTTTTCCTTTTATCT
ACTTTTTTACTATAGCCTATTCTCGTATTATTTTTCTCCCTTGGATTCTTTCAATGAAGAATTGTCTTTGATTTTTTTTTATTTTGACTTGCTTGAAAAA
AAAGTTGAATTAGATTACTATTTCAATCTGGTAATCTATTCTATGTAGATTCAAGATAATATAATAGAAAGAATCTAAAGTGTCGTAGAAAAAACTATAT
GTAGTTCTTTCTACCACACTTTATGATTCCAACCAGATCCTTTCATTTAAGACTTGGATTTTTATTTTGTTTAATCCCTTTTTCATTTCTTCAATGATTA
ATTGGAATTCCAATTAATCATTTTGGCTGGCAGTTTTTACATAAATAATAAGTAAAAAGGCAGTAGGAACTAGAATGAACAATGCAGTAGCAATAAATGC
GAGAATATTTACTTCCATAACCTCTTTATTTTCTTTTTTTCACAATAACTCGGGATGTAATCCCATGGAAAGGAAAAGGGGGTATCCTGTAAATTCAAGG
GGAGGACTTGCATTCTGATAATACTAAATCAATTCAATATTATGAATATAGGATCTATCAAATCAATTCATGGTTCGTA