CANTATAdb - search

Detailed information on CNT30257601

BLAST search results

BLAST vs Swiss-Prot:
sp|Q7FNT0|PSBM_ATRBE, E-value = 4e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30221321	Avena sativa	Hordeum vulgare	75.12	35.16	93.88	474	reverse complement
CNT30343618	Avena sativa	Eragrostis tef	66.09	61.41	93.53	417	reverse complement
CNT30585671	Avena sativa	Echinochloa crusgalli	76.23	35.6	90.23	481	reverse complement

Expression of CNT30257601

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MEVNILAFIATALFILVPTAFLLIIYVKTVSQND*

Sequence

>CNT30257601
ATAACTATAATAAAAAGGAAGGGAAATTGGATAAGATTAAGAAAGATCATGGGTTAGAGGTATAGAAAAGAAAAAGGAGAAAAGGATTAAAAAAAGAAAA
GAGGGAATTCCTAATCCAATCAAAAAAACCATTTTGGTCTTAGTATGGATAAAGGGTCTTCCTATGTTATAGTATTCCCCTCTCAACTATGAATTGATTT
GATAGATCCGATATTCATAATATTGAATTGATTCAGTATTATCAGACTGCAAGCTCTACCCTTGAATTTACAGGATACCACTTTTTCCTCCCCATGGGAT
TATATCCCCAGTTATTGTGAAAATAAAAAATAAAGAGGTTATGGAAGTCAATATTCTCGCATTTATTGCTACTGCACTGTTCATTCTAGTTCCTACTGCT
TTTTTACTTATTATTTATGTAAAAACAGTCAGCCAAAATGATTAGTTGGAATTCCAATTAATCATTGAAGAAATGCAAAAGGGATTAAATAAAAAAAATC
CAAGTCTTAAATGAAAGGATCTGGTTGGAATCTTAAAGTGTGGTAGAAAGAACTACATATAGTTTTTTCTACGACACTTTAGAGTCTTTCTATTATATTA
TCGGAGTGAAACAAAACAAAAAAAAAGATTA