Detailed information on CNT3021628


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201934Citrullus lanatusPisum sativum57.568.3897.08137forward
CNT30491131Citrullus lanatusOlea europaea49.164.3993.16117forward
CNT30167792Citrullus lanatusPistacia vera56.7240.7989.63135forward
CNT30194074Citrullus lanatusSecale cereale57.1414.1794.85136forward
CNT30224362Citrullus lanatusHordeum vulgare57.148.5694.85136forward
CNT30688863Citrullus lanatusTriticum urartu57.146.4795.59136forward
CNT30365705Citrullus lanatusSorghum bicolor57.9825.9995.65138forward
CNT3054267Citrullus lanatusAmborella trichopoda57.5618.4694.89137forward
CNT30585620Citrullus lanatusEchinochloa crusgalli57.982.6996.38138forward

Expression of CNT3021628

Peptides detected in this lncRNA

>peptide 1 (62 aa)
KKPIFFPSMKIQSLAVQRMLVLLSYRIRSPSCGNSTQKVMGYSYSTSLDNAQGSRLSSRSNF*

Sequence

>CNT3021628
ATAAAAAGCCTATTTTCTTTCCTTCAATGAAAATTCAATCTTTGGCCGTCCAGCGAATGCTCGTTCTGTTGTCATACAGAATCAGAAGCCCTTCTTGTGG
CAATTCCACCCAGAAGGTAATGGGTTACTCCTACAGCACGTCCTTGGACAATGCTCAAGGCTCTAGGCTGAGTAGCAGGAGCAACTTTTAATTTATTATG
AGCCCAAATGATGGATTCAATAAGTTCTTGCCGATGAC