CANTATAdb - search

Detailed information on CNT30201934

BLAST search results

BLAST vs Swiss-Prot:
sp|A6MM35|PSAB_BUXMI, E-value = 2e-172

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30673496	Pisum sativum	Setaria viridis	4.16	31.63	94.12	68	reverse complement
CNT3021628	Pisum sativum	Citrullus lanatus	8.38	57.56	97.08	137	forward
CNT30712408	Pisum sativum	Glycine max	16.95	100.36	90.61	277	forward
CNT30194074	Pisum sativum	Secale cereale	57.89	98.54	90.59	946	forward
CNT30365705	Pisum sativum	Sorghum bicolor	28.95	89.08	91.33	473	forward
CNT3054267	Pisum sativum	Amborella trichopoda	44.31	97.57	89.5	724	forward
CNT30103614	Pisum sativum	Oryza rufipogon	42.17	99.42	87.08	689	forward
CNT30115505	Pisum sativum	Oryza nivara	22.89	87.79	83.16	374	forward

Expression of CNT30201934

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MSPLFQGHHKGTENQDLLYPVSIVSYEQIEHLLGVSIPSHEL*

>peptide 2 (39 aa)
MPQNFLAKLHGRDSRKSTEKLLLIVRNEKQKYSDKDVPQ*

>peptide 3 (38 aa)
MRSKNILIKTSLSNIIMTLEVMCGSNTKPNTTSSGVLS*

>peptide 4 (31 aa)
MSPLFQGHHKGTENQDLLLIALYIQNNPRKT*

>peptide 5 (31 aa)
MIPSGYLACPPSSRAITREPKTKICFIRYQL*

Sequence

>CNT30201934
AAGCCATAAACTTTGCGTTTGAGGATGGAATCCCCCGAGAAGTGTTAGAATGGCAGTTCCCGCACCTTGCGAAGTACTAAATAAATGATTACTAGAATCG
GGGTTTTGAGCATAAAGATTCCACTGACCTGTAAAAAGTGGCCCTAATCCTTGAGGGTGAGGCAATACACTTAAGAAATTATTCCATCGAACATAATCTC
CTCTGGATCCTGGAATAGCCACATGGACTAAATGCCCTGCCCAAGCTAAGGAACTGACTCCAAATAGTCCTGACAAATGATGATTGAGGCGGGATTCGGC
ATTTTTAAACCAGGAAACGCTCGGGTTCCATTTCGGTTGTAGGGGTAACCAGCCCGCTAATAAGGATATGAAAGAAAGAAATAATAGAAAAATAGCTCCA
GTATAAAGATCCTCATTAGTACGTAAACCAATTGTATACCACCACTGATAAACACCGGAATAGGCAATATTCACTGGGCCAAGAGCACCCCCTCGAGTAA
AAGCTTCTACAGCCGGTTGACCAAAATGGGGATCCCAAATTGCATGAGCAATAGGTCTTACATGTAAAGGATCCTGTACCCATGCCTCAAAATTTCCTTG
CCAAGCTACATGGAAGAGATTCCCGGAAGTCCACAGAAAAATTATTGCTAATTGTCCGAAATGAGAAGCAAAAATATTCTGATAAAGACGTCCCTCAGTA
ATATCATCATGACTCTCGAAGTTATGTGCGGTAGCAATACCAAACCAAATACGACGAGTAGTGGGGTCCTGAGCTAAGCCTTGGCTAAACCTTGGAAATC
TTAATGCCATAATGCTTTTCAAATCCTCCTAGCCATTATCCTACTGCAATAGTTCTTGCTAAGAAGAATGCCCACGTTGTGGCAATTCCACCCAGAAGGT
AATGTGTTACTCCTACAGCACGTCCCTGTACAATGCTCAAGGCTCTAGGCTGAGTAGCAGGAGCAACTTTTAATTTATTATGAGCCCAAACGATGGATTC
AATAAGTTCTTGCTAATAACCACGCCCGCTGAATAGAAACATTAAACTAAAAGCCCATACAAAATGGGCGCCTAAGAAAAAAAGACCATATGCAGATAAT
GAGGAACCATAAGACTGAATTACCTGGGATGCCTGCGCCCATGAGAAATCGCGAAGCCACCCATTAATGGTAATCGAACTCTGCGCAAAGTTTCCTCCTG
TGATATGAGTTACTACTCCTTGATCATTTATACTTCCCCAAACATCTGACTGCATTTTCCAACTGAAATGGGATATTACTACAGAAATTGCATTGTACAT
CCAAAATAATCCTAGGAAGACATGATCCCAAGCGGATACTTGGCATGTCCCCCCTCTTCCAGGGCCATCACAAGGGAACCGAAAACCAAGATTTGCTTTT
AATTGCATTGTACATCCAAAATAATCCTAGGAAGACATGATCCCAAGCGGATACTTGGCATGTCCCCCCTCTTCCAGGGCCATCACAAGGGAACCGAAAA
CCAAGATTTGCTTTATCCGGTATCAATTGTGAGCTACGAGCAAATAGAACACCTTTTAGGAGTATCAATACCGTCACATGAATTGTAAATGCATGAATAT
GATGTACCAAAAAATCTGCAGTTCCTAATGGAAT