Detailed information on CNT30224362


BLAST search results

BLAST vs Swiss-Prot:
sp|P58311|PSAA_WHEAT, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696451Hordeum vulgareOryza sativa50.3114.3695.37799forward
CNT30673496Hordeum vulgareSetaria viridis4.7234.8897.3375reverse complement
CNT3021628Hordeum vulgareCitrullus lanatus8.5657.1494.85136forward
CNT30526549Hordeum vulgarePhaseolus vulgaris41.1298.9484.69653forward
CNT30167792Hordeum vulgarePistacia vera17.0781.8787.08271forward
CNT30713469Hordeum vulgareMalus domestica golden20.7265.890.58329forward
CNT30627902Hordeum vulgareDaucus carota28.2150.2288.84448forward
CNT30688863Hordeum vulgareTriticum urartu50.5738.1898.88803forward
CNT30497263Hordeum vulgareDigitaria exilis22.851.3593.09362forward
CNT30115505Hordeum vulgareOryza nivara15.4957.7595.12246forward

Expression of CNT30224362

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MSYHPLITXSKPPINRNGTLCKVSPCNMSYHPLITYGTPNIRLHFPTEMENDYRNCIVHPE*

>peptide 2 (38 aa)
XPRISNIHWTSSTSSSKGFHSGLTKMRIPNRMSNRSYV*

>peptide 3 (31 aa)
MVPQTSDCIFQLKWKMTTEIALYIQNKPKKT*

>peptide 4 (42 aa)
MFPLGQAHRKESENLDLLYRVSNGNSEQIKHLSKVLIQSHVW*

>peptide 5 (39 aa)
MIQNFLAKIHETDFRTSIERLLLIAQSEKQKCSDKDVLQ*

>peptide 6 (29 aa)
MTCDACAHKKSRSHPLIVMELCAKFPPAI*

Sequence

>CNT30224362
NNNCCCCAGAATAAGCAATATTCACTGGACCAGCAGCACCTCCTCGAGTAAAGGCTTCCACAGCGGGTTGACCAAAATGAGGATCCCAAATCGCATGAGC
AATAGGTCTTACGTGTAAAGGATCCTGTATCCATGATTCAAAATTTCCTTGCCAAGATACATGAAACAGATTTCCGGACGTCCATAGAAAGATTATTGCT
AATTGCCCAAAGTGAGAAGCAAAAATGTTCTGATAAAGACGTTCTTCAGTAATATCATCATGACTTTCGAAATCATGTGCGGTAGCAATACCAAACCAAA
TACGACGAGTAGTGGGGTCCTGAGCTAAGCCTTGGCTAAACCTGGGAAATCTTAATTCCATAATGCCTTTCAAATCCTCCTAGCCACTATCCTACTGCAA
TAATTCTCGCTAAGAAGAATGCCCATGTCGTGGCAATTCCACCCAGAAGGTAATGGGTTACTCCTACAGCACGTCCTTGTATAATGCTCAAGGCTCTAGG
CTGAGTAGGAGGAGCAACTTTTAATTTGTTATGAGCCCAAACGATAGATTCAATGAGTTCTTGCCAATAACCACGGCCGCTGAATAAAAACATTAAACTG
AAGGCCCAGACAAAATGAGCACCTAAGAAAAAAAGACCATATGCAGATAATGAAGAACCATAAGACTGAATGACTTGCGATGCCTGTGCCCACAAGAAAT
CTCGAAGCCACCCATTAATCGTAATGGAACTCTGTGCAAAGTTTCCCCCTGCAATATGAGTTACCACCCCTTGATCACTTANTCGAAGCCACCCATTAAT
CGTAATGGAACTCTGTGCAAAGTTTCCCCCTGCAATATGAGTTACCACCCCTTGATCACTTATGGTACCCCAAACATCCGACTGCATTTTCCAACTGAAA
TGGAAAATGACTACCGAAATTGCATTGTACATCCAGAATAAACCTAAGAAAACATGATCCCAAGCAGATACTTGACATGTTCCCCCTCGGCCAGGCCCAT
CGCAAGGAAAGCGAAAACCTAGATTTGCTTTATCGGGTATCAAACGGGAACTCCGAGCAAATAAAACACCTTTCAAAAGTATTAATACAGTCACATGTAT
GGTAAATGCATGAATGTGATGGACTAAAAAATCCGCGGTTCCTAATGGAATAGGTAACAAAGCCACTTTGCCACCTACTGCTACTAACTCGCCGCCTTCC
CACGTTAAGCTAGTACTTGTTGTTGCACCAGGAGCTGTTACGCCAGGCGCAGTAGCATGGATATTTTGTACCCATTGAGCAAAGATAGGTTGTAATTGTA
TGGCGGTATCCGAAAACATATCTTGTGGACGACCTAAAGCACTCATGGTATCATTATGAATGTACAAGCCAAAACTGTGAAAACCTAGAAATATACATAC
CCAGTTAAGGTGGGATATGATTGCATCGCGGTGTCTAAGGATGCGATCTAATAGATCGTTGTATCGAGTAGTTGGATCATAGTCTCTTACCATAAAAATT
GCTGCATGTGCAGCAGCACCGACTATTAGAAATCCGCCAATCCACATGTGGTGTGTGAACAAGGAAAGTTGTGTACCATAGTCAGNNN