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Detailed information on CNT30194074


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L399|PSAB_SACHY, E-value = 5e-102

BLAST vs NONCODE:
NONBRAT005487, E-value = 1e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673496Secale cerealeSetaria viridis7.8134.8897.3375reverse complement
CNT3021628Secale cerealeCitrullus lanatus14.1757.1494.85136forward
CNT30201934Secale cerealePisum sativum98.5457.8990.59946forward
CNT30491131Secale cerealeOlea europaea29.7910.7289.86286forward
CNT30712408Secale cerealeGlycine max27.1994.5785.44261forward
CNT30167792Secale cerealePistacia vera28.2381.8787.08271forward
CNT30219816Secale cerealeHordeum vulgare10048.1798.44960forward
CNT301761Secale cerealeZea mays10016.9497.29960forward
CNT30682212Secale cerealeTriticum urartu100.129.1699.79961forward
CNT30365705Secale cerealeSorghum bicolor49.2789.0896.41473forward
CNT30430934Secale cerealePapaver somniferum99.4814.6291.41955forward
CNT3054267Secale cerealeAmborella trichopoda74.7996.7789718forward
CNT30147758Secale cerealeBrachypodium distachyon18.7520.0796.67180forward
CNT30103614Secale cerealeOryza rufipogon47.1965.3796.47453forward
CNT30585620Secale cerealeEchinochloa crusgalli10018.7197.5960forward
CNT30115505Secale cerealeOryza nivara26.0458.6990.4250forward

Expression of CNT30194074

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MIQNFLAKLHETDIRTSIERLLLIAQSEKQKCSDKDVLQ*

>peptide 2 (29 aa)
MTCDACAHKKSRSHPLIVMELCAKFPPVI*

>peptide 3 (29 aa)
RLGFHLGCRCNQPAIKDSVERNNRKRAPV*

Sequence

>CNT30194074
AAAGGCTTGGTTTCCATTTGGGTTGTAGATGTAACCAACCCGCTATTAAGGACAGCGTAGAAAGAAATAATAGAAAAAGAGCTCCAGTATAAAGATCCTC
ATTGGTGCGTAATCCTATTGTATACCACCACTGATAAACTCCAGAATAAGCAATATTCACTGGACCAGCAGCACCTCCTCGAGTAAAGGCTTCCACAGCG
GGTTGACCAAAATGAGGATCCCAAATCGCATGAGCAATAGGTCTTACGTGTAAAGGATCCTGTATCCATGATTCAAAATTTCCTTGCCAAGCTACATGAA
ACAGATATCCGGACGTCCATAGAAAGATTATTGCTAATTGCCCAAAGTGAGAAGCAAAAATGTTCTGATAAAGACGTTCTTCAGTAATATCATCATGACT
TTCGAAATCATGTGCGGTAGCAATACCAAACCAAATACGACGAGTAGTGGGGTCCTGAGCTAAGCCTTGGCTAAACCTGGGAAATCTTAATTCCATAATG
CCTTTCAAATCCTCCTAGCCACTATCCTACTGCAATAATTCTCGCTAAGAAGAATGCCCATGTCGTGGCAATTCCACCCAGAAGGTAATGGGTTACTCCT
ACAGCGCGTCCTTGTATAATGCTCAAGGCTCTAGGCTGAGTAGCAGGAGCAACTTTTAATTTGTTATGAGCCCAAACGATAGATTCAATGAGTTCTTGCC
AATAACCACGGCCGCTGAATAAAAACATTAAACTGAAGGCCCAGACAAAATGAGCACCTAAGAAAAAAAGACCATATGCAGATAATGAAGAACCATAAGA
CTGAATGACTTGCGATGCCTGTGCCCACAAGAAATCTCGAAGCCACCCATTAATCGTAATGGAACTCTGTGCAAAGTTTCCCCCTGTAATATGAGTTACC
ACCCCTTGATCACTTATAGTACCCCAAACATCCGACTGCATTTTCCAACTGAAATGGAAA