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Detailed information on CNT3054267


BLAST search results

BLAST vs Swiss-Prot:
sp|Q70Y04|PSAB_AMBTC, E-value = 7e-98

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673496Amborella trichopodaSetaria viridis8.6329.7793.7564reverse complement
CNT3021628Amborella trichopodaCitrullus lanatus18.4657.5694.89137forward
CNT30201934Amborella trichopodaPisum sativum97.5744.3189.5724forward
CNT30712408Amborella trichopodaGlycine max34.3792.3984.31255forward
CNT30167792Amborella trichopodaPistacia vera19.1442.986.62142forward
CNT30194074Amborella trichopodaSecale cereale96.7774.7989718forward
CNT30103614Amborella trichopodaOryza rufipogon62.6767.187.31465forward
CNT30117327Amborella trichopodaOryza nivara17.6560.6590.08131forward

Expression of CNT3054267

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MTQYFLAKPHETDSRKSTERLLLTTRTEKQKYSDKGLPQ*

>peptide 2 (36 aa)
SAFLNHKMLGFHLGRRCNQPAIKDIAQRNNRKRAPV*

Sequence

>CNT3054267
TTCAGCATTTTTGAACCACAAAATGCTTGGCTTCCATTTGGGTCGTAGATGTAACCAACCCGCTATTAAAGATATCGCACAAAGAAATAATAGAAAAAGA
GCTCCAGTATAAAGATCTTCATTGGTGCGCAAGCCGATTGTATACCACTACCGATAGAGACCGGAATAAGCGATATTCACCGGACCGAGAGCACCCCCTC
AAGTAAAGGCTTCTACAACTGGTTGACCAAAATGTGGATCCCAAATTGCATGAGCAATAGGTCTTACATGTAAAGGGTCCTGTACCCATGACTCAATATT
TCCTTGCCAAGCCACATGAAACAGATTCTCGGAAGTCCACAGAAAGATTATTGCTAACTACCCGAACTGAGAAGCAAAAATATTCTGATAAAGGCCTTCC
TCAGTGATATCATCATGACTCTCGAAGTCATGTGCGGTGGCAATACGAAACATAATACGACAAGTAGTGGGGGTCCTAAGCTAAGCCTTGGCTAAACCTT
GGAAATCGTAATGCCATAATGCCTTTCAAATCCTCCTAGCCATTATCCTACTGCAATAATTCTTGCTAAGAAGAATGCCCATTTTGTGACAATTCCACCC
AGAAGGTAATGGGTTAGTCCTACAGCACATCCTTAGACAATGCTCAAGGCTCTAGGCTAAGTAGCAGGAGCAACTTTTAATTTGTTATGAGCCCAAACGA
TGGATTCAATAAGTTCTTGCTAATAACCGTGGCTGCTGAATA