Detailed information on CNT30254078


BLAST search results

BLAST vs Swiss-Prot:
sp|P21569|CYPH_MAIZE, E-value = 4e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691021Avena sativaOryza sativa27.2650.7488.95172forward
CNT30671343Avena sativaSetaria viridis43.2647.4888.28273forward
CNT30194493Avena sativaSecale cereale35.1832.2791.89222forward
CNT30442485Avena sativaAegilops tauschii46.4333.7991.81293forward
CNT30686383Avena sativaTriticum urartu47.3939.7191.97299forward
CNT30100563Avena sativaOryza rufipogon54.3636.7287.46343forward

Expression of CNT30254078

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MTTALAVEPLRDPTFSMALTTSMPLVTSPKTTCLPSSQAQGTVQMKNWEPLVLGPALAMERIPGLVCFLTNRSSANFSP*

>peptide 2 (42 aa)
MVMRPAAAPPIVTSKNTFGLGAISPGSEVLGLIGVGGGDKSSF

>peptide 3 (32 aa)
DTTLTRQGGVILDRRTLDDRSGGGSRAGRSRR*

Sequence

>CNT30254078
GCGACACGACACTGACACGACAGGGGGGGGTAATACTCGACCGACGAACTTTGGACGACCGAAGCGGAGGAGGATCTAGAGCTGGCCGCAGTCGGCGATG
ACGACGGCCTTGGCGGTGGAGCCGCTGCGGGATCCCACCTTCTCGATGGCCTTGACGACGTCCATGCCCTTGGTGACCTCGCCGAAGACGACGTGCTTGC
CGTCGAGCCAGGCGCAGGGGACGGTGCAGATGAAGAACTGGGAGCCGTTGGTGTTGGGCCCGGCGTTGGCCATGGAGAGGATCCCGGGCTTGGTGTGCTT
CTTGACGAACCGCTCGTCGGCGAACTTCTCGCCGTAGATGGACTCGCCGCCCGTGCCGTTGCCCTTGGTGCTGCCCTTGTAGTGCAGCGGCTTGCCGCTC
TTGCCGACGCCCTTCTCGCCNNNNNNNNNNGCCCTTCTCGCCGGTGCAGAGCGCGCGGAAGTTCTCGGCGGTGCGGGGCACCACGTCGGCGAACAGCTCC
ATGGTGATGCGGCCCGCGGCGGCGCCGCCGATCGTCACGTCGAAGAACACCTTCGGGTTGGGCGCCATCTCGCCGGGATCGGAGGTGCTTGGCTTGATCG
GGGTGGGTGGGGGGGATAAATCTAGTTTTCT