Detailed information on CNT30538642


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316252Brassica napusCorylus avellana46.8131.0787.27110reverse complement
CNT30518096Brassica napusJuglans regia62.1342.3284.93146reverse complement
CNT30703743Brassica napusQuercus lobata60.8551.0784.62143reverse complement
CNT30272829Brassica napusChenopodium quinoa32.3424.7690.7976forward
CNT30406606Brassica napusBeta vulgaris28.0921.3692.4266forward
CNT30505537Brassica napusNicotiana attenuata33.6225.8287.3479forward
CNT3044357Brassica napusPrunus dulcis44.2634.2186.54104forward
CNT30172426Brassica napusTrifolium pratense51.0639.7485120forward
CNT30261746Brassica napusBrassica rapa100100100235forward
CNT30597892Brassica napusFraxinus excelsior35.7427.5486.984reverse complement
CNT30213194Brassica napusHelianthus annuus61.747.0883.45145forward
CNT30714783Brassica napusMalus domestica golden26.3820.3993.5562forward
CNT30572433Brassica napusVitis vinifera42.9818.3385.15101reverse complement
CNT30319113Brassica napusAsparagus officinalis26.817.8390.4863reverse complement
CNT30723384Brassica napusLupinus angustifolius6046.3881.56141forward

Expression of CNT30538642

Peptides detected in this lncRNA

>peptide 1 (41 aa)
EYFVGVIGWGYLWHAHSKLGVEACSLSEGLGHVFLRVGETA*

Sequence

>CNT30538642
GAATATTTTGTAGGAGTTATCGGTTGGGGCTATTTATGGCATGCCCATTCCAAGTTGGGAGTTGAGGCATGCAGCTTGAGCGAAGGCTTGGGTCACGTGT
TTCTTAGAGTGGGGGAGACTGCGTGAGGCTGGTTTCACAGAGCAGCGTAAACCTCCCGCTCTTGACGGTGGAAGGATAACGGGGGCTTTCGCCTTCTGAG
CCCACTATGACCCATTAAACCGATTCCGATTGGAC